G502562 (LOC106580507)


Basic Information

Item Value
gene id G502562
gene name LOC106580507
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 37015347 ~ 37018829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU570755
GAAAAATAGCTAAATGATAGATACATCACACATTTACAGAAGGGGGTAATCGACTTCCCTCCCATACCACCCGTTTTACATAGTTTTCAAAAATTATAAAATGACTATTACATCTTTGATGTGCATTGctgttatttagaattcaagacatcATTTTACATACAGGCTGTCTTCTGCTACTGGAATTGTAAATTCTCGCACGTCTTGAAAGAGTGCATgagtctatttatttattttttaacaaaaACAATCATGTATAGAAATTCCATTTTGTCATGTTTTGGCCATGTCCACTGTAAGAGAACACAAATGTTTACACAGAATAGTTCCAATCCCATGTAGGTACATTTTCATCAAAGCTGCCTGTTGAAGTCTAACCTTGATACTAAATTACAGTGTGCTGAAATACATCAGAAAATAAGGTCATTTGAAATCAAATATTTGAAAAAACTTTTTGGCTGGTACGGGATAAGGGGGAAAATGCCAAAAGATCGAACATAGTGAACATACACAGAAACCACCAGTGTGCGTTCATTTTCTTGTCTTTTCTGTGTGACCTGTTTTATAGCAACAGAGCCAACCCATCACATTCCAGTGTAGATTCTCATCTTTTCCAGCTATAGGAATAGGAAATACAATCTATGCATCTTCTCTGGAATAACATCAAGTCCACTCACAATCACAGAGGTAGCTGACATGAAGAAAACTATAAAACACGGTTGAAAATAGTTTTGTTGGCTGAAAAACCATCCAGTGGCTGTACTGTACAGTTTAATATATACTCTACCAGGAACACAATGACCCAATAGAGAACACCGTGGAAGTGATATCATAGATCACTAATGTTAAAAGTGCCAACCAGGGGCGGACTTAAACTGACATTTTTCCATGGAAAATGACCGTATATGATTATTATCCCACAATTGAAAAGATTTATTTCACAGAATATATAGGCCATAAAAAGTTGTTAAATAACAGTCAGTGGGGTTCCCATGGGCAGCTGGGGACAGTTTCAATGAATTGAAACCCCTTCAACGTAGCAAAGTCCAACCCTGGGGCCTACTAAAGaagtgccagagagagagagagggagaaagcatAGCATACAAACTGCTGACTTGCATTTGATTTCTCCATGTGGAGACAATCATTGGCCTCAAGGTGGCGCTGGTTGGTTACAGAAACACATTTGTTTCCTGGTGACTCTCACCTGGGGTATATTTGGTTGGTTGTCAGTCACAACGTTGAGAGGTTTATTCTGTACCATTTCAGTTATAGATGTTTGGCAATGAGAAAGACAATTTAATAAGTCATTCATAAGTCACGGTCTACATATCATACACATCTATTTCAGTCTAACAATTTTGCACCCCATCGCCCACACAGTACATGCATGCAGCCTCTCAACTCTAAATGACAAATGTCCTCATGTATTTCCACATCAGAGGCATGACAGGGGGGTGGACTAAAGGGGACTCCGACTCTGAGGCTTTATAAATACGAGCACTGTTCTCAACACAGTATCTGACTCAGAACATTAATGACAGGCTTTGACGAGACGTTTCTTACAGAGATTGTGTTGCCCACAGTCTCCAAATAAGGCTTCCAAGGAACCAGCCTGGAATCCAACCAGTAGATACCCCTGTATTTTTCCCCCAGATAAGACAGCTGTTGTTCAATTAGTCATATTTGCACCTTTTAAAATGTATCGTAGCCTAGAGGGTTGACATATTTATAACCATATATTTAATTACATGTTGTACTTTGACATATAACAAAGAGCAATGTGTTCAAAACTCTCCAAAGCAAGGCTTCAAACACACACTCTGTAGTGTACTTTACTTTGGCAGATGAAATGGCTATTAATTCACCAACAAAGATGGAAAACAATAAAAGGTGACCTCATAAAAACAACACAATAAGCCATGTTACCAGTGGCTAACAGGTGAGGGAAATTCAGTGGCAACATGGGAAATATAAAACAAATCAAGCAAGAGTGATTGAGACGCAGAGTTTGCCCCAGTAACAGAGGGGCAGAACAGACCAGCAGGTTTGTGTGAGCATTCGATGCTCAGGTCATGTCATCTAGCTGTATAGCATGTCATACATCTATAAAATGTTATCTAGGGAATAACTAAACATACAGAGATATCATTTTAAACAATATTTCAAAAATAAAGTTGTTCATATCACTTGCCCTGTTGAGACAGCTATTTGAGATATTGGGCAGATATTGTGCACAGAATGTGTAAATTGTCTTGTCAAATTATGTTTCTGAGTTCACAAATCGTTTTTACAGTTCATTCATACTTGATTTGATAAATAAAAAGACGTGTGCATACAACCTGTCATGCACATAACAGTATACTATCCATAGTTCCACTTCTCAAACATTCAATCGTTTTTACTATGATGCTTAAACATTGGCAGAGTATACACAAAAAGAAAAACTCAAACCAAGTCTGATCAATCCAACGACGTACTCTACTCTCATTCACCAGGTAGAGGAAGTCTGTAAAATGTGccacaaaaaaaacaatattgTGTTGGCATATAAAAGAAACCGTTTGTGTCTGCCATCCCGACATGACAAGGATGAACACTGGCAAAAGCCTCAGTGACCGGTCAAACAACACTGATCTTTAAGAAAGAAAAAAGGTATCATCGGGTCAGTGTGCTGGGAGGCCCATGTGCCAGCTGTCATCTTGGAAACACTCAGAACATCATCATCCCTCATCATCCCATATATTTGTCCTTCCTGTAAGTCTTCCTTCCTGCTGATGAAGCAAAGAAAATTAGACCGTAGTGGAGAAACGGACAGGTTATTACAACACGAAAACCCAATACAGCAATACCGACCCGGTGTGTCAATCATATCTTGTGATTTTCAATGTCTTGTCTTTCCTCCTTCCCCTGGCGGCCAGTACTATCATTGAGCCCTAACGTCCGCTGCCTGTGTGGTGATTCCTCTCTGCAGCAGCATGGTGACCTCCTGTGATCCCCACTAAGCTACAACATGGCTATACTCTCAGGGGTGCAGTTGAGATGGGTGGATGTGCTACTTCCTCCAGGGGACTTGAGGCCCTTGGCTCCCATGCCCAGCGTCATGGCCCCGGCCGCGCCGCCCATCATGACCCCCGAGTGGTGGTGGGTCTGCTGCAGGCCGACCATCATGGTGTCATTGGTGACTGTGCCAAACTCATAGGTGAAGGTGCCATAAAAAACCAggatgtccacggtgaagaccCACTCGCAGATGGCCGCCGCATGCTGGAGGACAAAGC

Function

NR:

description
PREDICTED: transmembrane protein 150A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU570755 True 3284 lncRNA 0.41 2 37015347 37018829

Neighbor

gene id symbol gene type direction distance location
trnag-ccc-2 NA coding downstream 27252 36988025 ~ 36988095 (-)
LOC110525876 LOC106585115 coding downstream 27582 36970068 ~ 36987765 (-)
LOC110525875 LOC106585114 coding downstream 46111 36951506 ~ 36969236 (-)
LOC118965024 NA coding downstream 157115 36854388 ~ 36858232 (-)
LOC110525874 LOC106585113 coding downstream 234524 36776871 ~ 36780823 (-)
vamp5 LOC106585117 coding upstream 18610 37037439 ~ 37047277 (-)
vamp8 LOC106585118 coding upstream 31872 37050701 ~ 37065030 (-)
ncaph LOC106585119 coding upstream 49963 37068792 ~ 37077715 (-)
LOC110525880 casp3 coding upstream 78950 37097779 ~ 37102994 (-)
LOC110525881 LOC106585120 coding upstream 141550 37160379 ~ 37193152 (-)
G502530 NA non-coding downstream 82995 36932097 ~ 36932352 (-)
G502529 NA non-coding downstream 83533 36931311 ~ 36931814 (-)
G502527 NA non-coding downstream 88174 36926931 ~ 36927173 (-)
G502526 NA non-coding downstream 88755 36926288 ~ 36926592 (-)
G502524 NA non-coding downstream 90357 36924776 ~ 36924990 (-)
G502591 NA non-coding upstream 60589 37079418 ~ 37079622 (-)
G502593 NA non-coding upstream 65090 37083919 ~ 37084236 (-)
G502598 NA non-coding upstream 72034 37090863 ~ 37091122 (-)
G502610 NA non-coding upstream 84177 37103006 ~ 37103337 (-)
G503009 NA non-coding upstream 92048 37110877 ~ 37111089 (-)
hk2 LOC106585103 other downstream 498079 36507843 ~ 36569143 (-)
G501142 NA other downstream 1247418 35765366 ~ 35767929 (-)
G498960 NA other downstream 2974173 34040359 ~ 34041174 (-)
LOC110525812 LOC103397138 other downstream 3678567 33332650 ~ 33336818 (-)
G498484 rpl6 other downstream 3684843 33327507 ~ 33330504 (-)
G503064 NA other upstream 221015 37239844 ~ 37240937 (-)
G503159 LOC106580514 other upstream 312655 37331484 ~ 37336552 (-)
nsmfb nsmf other upstream 1936041 38926899 ~ 38967540 (-)
G505472 NA other upstream 2187049 39205878 ~ 39206269 (-)

Expression


Co-expression Network