vamp5 (LOC106585117)


Basic Information

Item Value
gene id vamp5
gene name LOC106585117
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 37037439 ~ 37047277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160626.1
AGTTTACGACGGGAATAGAGATAGTAACGTGAAAGCAATGgAGAATGGGAAGAACCGCCTGCAGCAGGCCCAGAAGGAGGTGGAAGAGGTGAAGGTGATCATGCTAGATAATCTCAACAAGGCTGACGAGAGGTCAGGCAAGCTGGGAGAACTGGAGAACAGGGCCGATGAACTTCTGGAGAAGAGTAAGGCTTTCTCAAAGTCTGCTGGAAGAGTTAAACAACAGAAGTGGTGGGAACACATGAAAATGAAAGTGTTGCTGTCCGGTATAGGGTTTGTCGTGGCAGCCATCATCATTGGGATTGTTGTATGGAAAGCGTTTGAACCTGACGACCGCAGCTCAAACAGCTCCACTGCTGTAGAGCAGCCCACCTCAGGGCCTTAGGACCATAGACTGTCTGTCAGAGCAAAGGACATGGAGGAAATGAAGATGGAagatggagatggagacagggGCAATCGAGGCCTCCCCGGAAATAAGGAGTCAATCAGACAAGAATAGTGCATGTAGATGAATATATAGGTTtattaacctggtcccagatttgggaccaaaCATTTGGCATGACATTGAGCGACAAGGAGTTGGTATAATGATAGCACAAACATGCTttccacctgagctcaatataCGTTTTGTGGGTTGACTTTTCTTAACTTTTTAATCTGTGATATTGTTTATTTTTAGAAGCATTTTAGGCTCCGTGCTCAGTGTGTAGATCGTTGAATGAAATGGTACCATCACTAGCTCAGCTGCTTCCCAATTCAGTATCGTCTTCAACTGGCCGTAGTAGTTGGTCAGGCTCACTAGTTTAACATTCATACTCAGAAATGCTTCAGCCTTACCATAGGATTTGGTATATGTGAATGTTTGGTCAG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08513 VAMP4; vesicle-associated membrane protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160626.1 True 879 mRNA 0.45 3 37037439 37047277

Neighbor

gene id symbol gene type direction distance location
trnag-ccc-2 NA coding downstream 49344 36988025 ~ 36988095 (-)
LOC110525876 LOC106585115 coding downstream 49674 36970068 ~ 36987765 (-)
LOC110525875 LOC106585114 coding downstream 68203 36951506 ~ 36969236 (-)
LOC118965024 NA coding downstream 179207 36854388 ~ 36858232 (-)
LOC110525874 LOC106585113 coding downstream 256616 36776871 ~ 36780823 (-)
vamp8 LOC106585118 coding upstream 3424 37050701 ~ 37065030 (-)
ncaph LOC106585119 coding upstream 21515 37068792 ~ 37077715 (-)
LOC110525880 casp3 coding upstream 50502 37097779 ~ 37102994 (-)
LOC110525881 LOC106585120 coding upstream 113102 37160379 ~ 37193152 (-)
ogfod2 ogfod2 coding upstream 293428 37340705 ~ 37344084 (-)
G502562 LOC106580507 non-coding downstream 18610 37015347 ~ 37018829 (-)
G502530 NA non-coding downstream 105087 36932097 ~ 36932352 (-)
G502529 NA non-coding downstream 105625 36931311 ~ 36931814 (-)
G502527 NA non-coding downstream 110266 36926931 ~ 36927173 (-)
G502526 NA non-coding downstream 110847 36926288 ~ 36926592 (-)
G502591 NA non-coding upstream 32141 37079418 ~ 37079622 (-)
G502593 NA non-coding upstream 36642 37083919 ~ 37084236 (-)
G502598 NA non-coding upstream 43586 37090863 ~ 37091122 (-)
G502610 NA non-coding upstream 55729 37103006 ~ 37103337 (-)
G503009 NA non-coding upstream 63600 37110877 ~ 37111089 (-)
hk2 LOC106585103 other downstream 520171 36507843 ~ 36569143 (-)
G501142 NA other downstream 1269510 35765366 ~ 35767929 (-)
G498960 NA other downstream 2996265 34040359 ~ 34041174 (-)
LOC110525812 LOC103397138 other downstream 3700659 33332650 ~ 33336818 (-)
G498484 rpl6 other downstream 3706935 33327507 ~ 33330504 (-)
G503064 NA other upstream 192567 37239844 ~ 37240937 (-)
G503159 LOC106580514 other upstream 284207 37331484 ~ 37336552 (-)
nsmfb nsmf other upstream 1907593 38926899 ~ 38967540 (-)
G505472 NA other upstream 2158601 39205878 ~ 39206269 (-)

Expression


Co-expression Network