Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_025608 |
| gene name | cacna1ha |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 39759130 ~ 39952441 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| cacna1ha | Predicted to enable low voltage-gated calcium channel activity and voltage-gated sodium channel activity. Predicted to be involved in several processes, including calcium ion import; neuronal action potential; and positive regulation of calcium ion-dependent exocytosis. Predicted to act upstream of or within calcium ion transmembrane transport; flagellated sperm motility; and regulation of ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in neuron projection. Is expressed in adaxial cell; diencephalon; heart; and retinal neural layer. Human ortholog(s) of this gene implicated in childhood absence epilepsy and primary hyperaldosteronism. Orthologous to human CACNA1H (calcium voltage-gated channel subunit alpha1 H). |
| id | name | namespace |
|---|---|---|
| GO:0019228 | neuronal action potential | biological_process |
| GO:0070509 | calcium ion import | biological_process |
| GO:0034765 | regulation of ion transmembrane transport | biological_process |
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0086010 | membrane depolarization during action potential | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0045956 | positive regulation of calcium ion-dependent exocytosis | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0001518 | voltage-gated sodium channel complex | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005891 | voltage-gated calcium channel complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005244 | voltage-gated ion channel activity | molecular_function |
| GO:0005245 | voltage-gated calcium channel activity | molecular_function |
| GO:0005248 | voltage-gated sodium channel activity | molecular_function |
| GO:0005261 | cation channel activity | molecular_function |
| GO:0005262 | calcium channel activity | molecular_function |
| GO:0008332 | low voltage-gated calcium channel activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-130103-1 | Predicted to enable low voltage-gated calcium channel activity and voltage-gated sodium channel activity. Predicted to be involved in several processes, including calcium ion import; neuronal action potential; and positive regulation of calcium ion-dependent exocytosis. Predicted to act upstream of or within calcium ion transmembrane transport; flagellated sperm motility; and regulation of ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in neuron projection. Is expressed in adaxial cell; diencephalon; heart; and retinal neural layer. Human ortholog(s) of this gene implicated in childhood absence epilepsy and primary hyperaldosteronism. Orthologous to human CACNA1H (calcium voltage-gated channel subunit alpha1 H). |
| ensembl_id | ENSDARG00000060496 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00050444 | False | 1104 | mRNA | 0.49 | 10 | 39759130 | 39877991 |
| TCONS_00050445 | False | 7875 | mRNA | 0.48 | 33 | 39853788 | 39952441 |
| TCONS_00050447 | True | 2058 | mRNA | 0.45 | 14 | 39922602 | 39946275 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_025607 | epn2 | coding | upstream | 68912 | 39656188 ~ 39690218 (+) |
| XLOC_025606 | NA | coding | upstream | 126916 | 39626833 ~ 39632214 (+) |
| XLOC_025605 | NA | coding | upstream | 135205 | 39618568 ~ 39623925 (+) |
| XLOC_025604 | prpsap2 | coding | upstream | 145904 | 39600562 ~ 39613226 (+) |
| XLOC_025603 | cln3 | coding | upstream | 159791 | 39579393 ~ 39599339 (+) |
| XLOC_025610 | ccdc97 | coding | downstream | 5966 | 39958407 ~ 39967412 (+) |
| XLOC_025611 | gfer | coding | downstream | 209958 | 40162399 ~ 40168482 (+) |
| XLOC_025612 | syngr3a | coding | downstream | 217775 | 40170216 ~ 40180201 (+) |
| XLOC_025613 | smcr8a | coding | downstream | 302967 | 40255408 ~ 40258950 (+) |
| XLOC_025614 | bud31 | coding | downstream | 332157 | 40284598 ~ 40287841 (+) |
| XLOC_025429 | BX649540.1 | misc | upstream | 9510094 | 30248739 ~ 30249036 (+) |
| XLOC_025601 | BX537342.1 | non-coding | upstream | 194631 | 39555762 ~ 39564499 (+) |
| XLOC_025599 | NA | non-coding | upstream | 494613 | 39258810 ~ 39264517 (+) |
| XLOC_025598 | CR392006.1 | non-coding | upstream | 576268 | 39182746 ~ 39182862 (+) |
| XLOC_025618 | NA | non-coding | downstream | 399232 | 40351673 ~ 40352408 (+) |
| XLOC_025619 | NA | non-coding | downstream | 451728 | 40404169 ~ 40404939 (+) |
| XLOC_025623 | BX649559.1 | non-coding | downstream | 839279 | 40791720 ~ 40794879 (+) |
| XLOC_025627 | NA | non-coding | downstream | 946183 | 40898624 ~ 40902157 (+) |
| XLOC_025628 | NA | non-coding | downstream | 992599 | 40945040 ~ 40948999 (+) |
