XLOC_025682 (prkcsh)


Basic Information

Item Value
gene id XLOC_025682
gene name prkcsh
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46762703 ~ 46795783 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050551
TTCTCCTCCAGTGAAGTGTCCGATGTGCAGGTGTCCTCATCAGAAGAGACACGCTCCAGCGAGAAGTTCTTCAGGTCACGCGCCTCTAGTGGGACACAGTGTTTGTTCCTGCATTTGGGCATCATGACCTGCGTGCATCTATTGTTGACTTTGGTCTTTGCTGTGAGTTTGGGGACACCTGTAGAAGTTCATCGACCACGAGGAGTACCACTGTCAAAGAAGCCGTTTTATGAGGAGAACAAGCCTTTCACCTGCCTCGATGGATCCAAGACTATTCTTTTTGACCAAGTGAATGATGACTACTGCGACTGCAAAGACGGTTCAGACGAGCCAGGCACTGCTGCTTGTCCCAATGGCAAATTCCATTGCACCAATGCTGGTTACAAACCCACCTTTATCCCATCCTCTCGTATTAATGATGGCATCTGTGATTGCTGTGATACTACTGATGAATACAACAGTGGAGCCAAATGTGAAAATACCTGCAAGGAACTGGGACGTAAAGAGAGGGAGGTCCTACAAAAGATGGCTGAGATCACCAAAGAGGGCTTCCTCCTCAAACAGCAGCTCATTGAGGAGGCCAAGAAAGGAAGAGGAGAAAAGCAGAGCAAAGTGACTGAAATGCAGGACAATAAGAAACAGCTTGAGGAGAAGGTTGAAGCACTGAGGACAGTGAAAGAAACAGCAGAGCAGCCTGAGAGGGAAGCTAAAGAGCGCCATCTCAAGGCCTGGGAAGAACAAAAGGCAGCTATTCGCTTGGTGAAAGACAAAGCTAAAATGGCTGAAGCCTTTTTAGAGCTGGATGATAATGCAGATGGCT
>TCONS_00050552
CCACGTTTGACgcgtaacatttattattaatgatagcaataaatattgtaataatacgtgcaataatatgtaatattattgTTTGGGATAGTTACTTCTGTATTTAAATGCTTGCCTGGACATTTATTTTCTAAACTCGTGGTACTCAAATCTATTtctgaaaacatgttttatgttttgcagaaaataaaatttataaaaagaaatCTTGTTCAGATTACCGTATGATTAAACCTCAAATGACTACATTGCCCACAATGCCGCATTCCTCAACTTGAATCCACCAATCAAATGAGAACACCGCTCATCTTGTTGACGTACGACGTGGTGCAAGAGCGCTCTACGGAAGTCACGCGCCTCTAGTGGGACACAGTGTTTGTTCCTGCATTTGGGCATCATGACCTGCGTGCATCTATTGTTGACTTTGGTCTTTGCTGTGAGTTTGGGGACACCTGTAGAAGTTCATCGACCACGAGGAGTACCACTGTCAAAGAAGCCGTTTTATGAGGAGAACAAGCCTTTCACCTGCCTCGATGGATCCAAGACTATTCTTTTTGACCAAGTGAATGATGACTACTGCGACTGCAAAGACGGTTCAGACGAGCCAGGCACTGCTGCTTGTCCCAATGGCAAATTCCATTGCACCAATGCTGGTTACAAACCCACCTTTATCCCATCCTCTCGTATTAATGATGGCATCTGTGATTGCTGTGATACTACTGATGAATACAACAGTGGAGCCAAATGTGAAAATACCTGCAAGGAACTGGGACGTAAAGAGAGGGAGGTCCTACAAAAGATGGCTGAGATCACCAAAGAGGGCTTCCTCCTCAAACAGCAGCTCATTGAGGAGGCCAAGAAAGGAAGAGGAGAAAAGCAGAGCAAAGTGACTGAAATGCAGGACAATAAGAAACAGCTTGAGGAGAAGGTTGAAGCACTGAGGACAGTGAAAGAAACAGCAGAGCAGCCTGAGAGGGAAGCTAAAGAGCGCCATCTCAAGGCCTGGGAAGAACAAAAGGCAGCTATTCGCTTGGTGAAAGACAAAGCTAAAATGGCTGAAGCCTTTTTAGAGCTGGATGATAATGCAGATGGCTTAGTGTCAGTCTCTGAGCTTCAGTCTCATGCAGAATTGGATTCAGATACTGATGGCACACTTTCTGAAGCGGAAGCCAAGGGGCTGATGGGAGGAGTCGAACAAGTGGATACAGCAACATTTGAGTCCGTTTGGGAAAACATTAAAGACAAGTACCACTCTGAGTCGCAGCCTGAAGAACCTGCACCAGTGGAAACCCCTGTAGATGAAGTGAAGGAGCCAGTTGTAGACAATGAATCTGAGCCGTACCCAGAAGACATCTCTGAGGAAGAAGATGAGgacgatgatgatgacgatgaatATCATGAAGAGGACGAAAAGGCGCCACCCACCATGAAGACTCCAGAGAAGAGTCAAGAAGATGAAGAAGCCATGCCACCCTACGAGGCGGACACCCAAGTGCTTATTGAAGCTGCTCAAAAGGCCAGAGATGATTTTGAGGAGGCTGAAAAAGCACTTCGGGAAATGGATGATCAAATCAGAAACATTGAAAAAGAGCTGTCCTTTGATTTTGGCCCTAACGCCGAGTTCACATACCTGTACAGCCAATGCTACGAGCTCTCGACTAGCGAGTACATATACAGACTCTGTCCTTTCAACCGTGTTTCACAGAAACCCAAGTTTGGAGGATCAGAAACCAACCTTGGGACATGGGGAAGCTGGTCAGGGCCTGAAAATAACAAGTACTTGTCGATGAAGTACGAGCACGGCACTGGGTGCTGGCAAGGTCCAAACAGATCAACTACAGTGAAGCTGACTTGTGGGAAGGAGACCATGTTGACCTCCACGTCGGAGCCCAGTCGCTGTGAATACCTAATGGAGTTCATCACTCCTGCCGTGTGCCAAGAGCCAAGCAACATTGACCTCTCGGCACATGGACACACGGAACTCTAGACCCCACAGTCTGCTTGTTGATGCACGGTACGACACTCAATTCATACTTTATTAAATTGAGAACAAAAAAGCAAGGCCGGATTTAGCAAGATTTGTTgagtcttaattgttttgttggaCTTTTCACACTTCTAATGTAATGAGGTCTGGAGTTTGCCATAGTGATGACAGCTAGTCTGACTTGCTAATAGTTTCTGCTAACAACACTGGAGtgattgtaaaaaacaaaagcatCTACAACTATTATTTAATGATGCAGATAGAGCTATAAATGGTGTAACTTTGATTTGTTATGCCAACGATTGCAAACCTGTGACccatttgtttcatttgttttcacAAAGTGTTAATTGTCTACATGTGTGGATTTCCTGGGTGTTATACAGCTATGGAAAAATGAAGAGCAAGTTCTCAGTTTGTCTAGATTTATGAGATTTATTAGACACCAATGTTAAAGATGCAAAAGGTGTTtgttttccaaaacattttttgttatgctggttgaaagtctctttacatcCTGATAGCAGTCATTAAATTAAGTGGTCCagatgtatttatatgtgttttattaatatgtggaAGGTGTTGGACCAAGAAAAGTTCATCCAATCAAAATGTTCGGTCCGAACATTATGATAGGCTGTCCTACCTCAGTGTAACCGCAGGGTCTTAGGGTGTATTCATATTAGGTACTGTTGCCTTGAACCGTGCTGAATCGCGATTGTCCCCCCTTCTCCTCTCCCTTTTGGCCTGTACTCGCACTGCATTTTTTATCTAGAAACCTGAGCACGCTTATGTCATTGATGCGCTGTTTAAAAGGAAGAGAAGCtttctcgctcagcacagtggacattgctttaattatattgttttagtcaactgggatgcagtgacacacagtcaaatattttgctgaacagatctgcaacttttgatgctcataaattgAGTGCGcccttaaaaatgtgttaaatctcaaaagctaaattttagacCTTAAGTCTTGAATCTGCATACCTCTGCAAGAAGTACAGCATAAAGGATTATGTCATTGGTCCATTCACTGATGCAGTTCAGACTAGAGGTCTGATTTCCTGCGGTGCAGGAATAAATTTCTAATTTAAACGTGGTAACAGTtagtaactggtgtaatttgatCGGGTGCAGGCGTCTAACAATAAAGCGCTCCCGAGTCCCGATGTTATTTGAGAACACCATATTTGTAATTTCCTCATTCTTTTTAAACATCGATACAGTCActtgcccctttcacacagtgataccggtaaatatctggaaaatttacggaacgactttaccggtatatttaaaaaagcgatgttcacacaggcgaggatgttacggaatttttccggaaaagagcattcacacatccattccaaaataccggtaaattctgacattattcaCCActaatgagctttaaacggctgcacttgtatttgtaaacatttgactacattacaaagtCTGTGGATGATcattattgtgaacaacttcgatgaaaacatatggaggatcactttcgcatgtcgagatgttcataatatgtgcgtgagctggcgctcacaggctgtttacaaacaacaaacaaagggtaaacaaacaacggcttatcataagcatcttatcgatgattatatacacagttggcattaagatgaacatataaacgttatctgactaacttctagcagctaaatgcgtctgggaaaatattcaaaggcttttattctcataaattacgcggacgtaaatgcgtctgactgttctgtttggctaaagcagatgtctcacgtcagcacgttttagacgtgcacgcgctctttccggcaatcttccttttgcattcacacagcgcagcattccggcaaattaccgctaatgttacaacttctctttacggaaaatagccagaacgaatttaccggtattttcaaaaagggcctgttcacacatacagacctttcaggaaaattgccggtaattttccggaaaggtttgtatgtgtgaaaggggctatagacgcaaatggaaaaaaaaaatgtgcgcaATGTGATAATAACTCAGTTTTACCCTTTCATCGCAtcacaaaactgacatttagcctataATCCTTGCACAACATACAGTTTTATCTGTTTTAGTACCCAATTTAAACGTGAGATTTTGGACACCATATCTATATTTAGCGGGAACGGTCAGGTCGAGCAGCCAatgaacaaaggctgaatatgTGGTGGGAGCGTTTAGTTTCAGAATAAAACCAGAATAAAATAGTGATGTCATGCATTCTGGAGGCGTGGCTTTGATGATTTTTAGGGTTGGAGAGACTTTCAGAGCTATTAGGCTAACATTAGTATTTTCTGAGCTTTCCTATTGTaccttttaatgtttgttttatatgtGTCTGAGAACATTTATTCCAGATTTTTAATTGGTAATTTTGGTACTTGAAGCAGTTTTTTTATAGTTaggtaaaataacaaatgttatcACTTGTTGTGAATGAAAATAAGGGTTGTTCTACCAAAtgttgatttctttaaaaataaaaacattgttattttaaaaatgaatataaatagaAATATCATAAGTAGTTTACAtaataaaagacatttaattaaacataacATCAATCAAATTATTTAAGATGGTCAtgcataatttttatatttttgtctgcagttgttgttgttgttgttgttgttaaaaaccTGTGACTTTCTCAAAATTTGAGTTGGCCTAGCTTGCAAATCTGCATTCCATCTACACTAATTATTATGGTGAATTGTCAATTTATGACCACAAAGTGCCAATAATTCTGTATTTCTTTGTTGTGTATGTTCTTCTGTGTTTTTTGTGTGGTcattaaacaatattaatgttTTCCTTTTTCTCTTTGTCTATAGGTTGTTGCACTGTGGGAACATTTTCTCTGTTCGAGCTGTTTGAGAAACTTCTATTAGTTTTGCAGTTTGGATGTTGGGGGAGCATTTAATAacttgtaatttttgtttttgttattttaactgGTGTAAATCTGTTCTTTTCACATTCCATGAATATTGTATGATGTTTAAATAAATCcaatttgacatctgaaacagttttttgttttgttttgtgatatGAGTCCCTATACACCCTGTAgtgtatgaattattattattattattataattttatttttatttttttgtcatccaGAATTAATGTCTGATTGTCCTTCCCCCTCCACTATtttaatacaaacataaataaataaataaataaataaatgtcaaagcatagatttgaagtgtgtgtgtttttttttttctgaaagattCAGTGTAAACTTCCACAATGGTTTATCAGTGGCAATATTACTTAAGTGTGCAACTGTTCCTCTTGAgaggttttattattttttttatgttttttgtttgatcGTTTTTAATGAAGTAATAAATTCCTGATTAAAGGGTGCTGCTGATTTCTTTAATAAGGTGTACCATATTTTGATTTTAAcccatttactttaaaatgtctggtttctttaaaatgcttgATGAATAGTTGCCAACAGGTCTGGTGCTTTGTTACTTTTTATACGTCAAAAACTCATCTGTGAAACTTTTATCCATTTAGACCAAAGACGCCCAAACTAGGGCTCATGAGCCAAAGTTGGCCTATCATCaaatctgagaagagagggagaatgatggggatggttttgaGATTTTCACTTCAAATTTAATGTAGCCCTTTGTTTTAGTGTTAAAAGCTaagtgaaattaaatgt
>TCONS_00050553
AATCCACCAATCAAATGAGAACACCGCTCATCTTGTTGACGTACGACGTGGTGCAAGAGCGCTCTACGGAAGTCACGCGCCTCTAGTGGGACACAGTGTTTGTTCCTGCATTTGGGCATCATGACCTGCGTGCATCTATTGTTGACTTTGGTCTTTGCTGTGAGTTTGGGGACACCTGTAGAAGTTCATCGACCACGAGGAGTACCACTGTCAAAGAAGCCGTTTTATGAGGAGAACAAGCCTTTCACCTGCCTCGATGGATCCAAGACTATTCTTTTTGACCAAGTGAATGATGACTACTGCGACTGCAAAGACGGTTCAGACGAGCCAGGCACTGCTGCTTGTCCCAATGGCAAATTCCATTGCACCAATGCTGGTTACAAACCCACCTTTATCCCATCCTCTCGTATTAATGATGGCATCTGTGATTGCTGTGATACTACTGATGAATACAACAGTGGAGCCAAATGTGAAAATACCTGCAAGGAACTGGGACGTAAAGAGAGGGAGGTCCTACAAAAGATGGCTGAGATCACCAAAGAGGGCTTCCTCCTCAAACAGCAGCTCATTGAGGAGGCCAAGAAAGGAAGAGGAGAAAAGCAGAGCAAAGTGACTGAAATGCAGGACAATAAGAAACAGCTTGAGGAGAAGGTTGAAGCACTGAGGACAGTGAAAGAAACAGCAGAGCAGCCTGAGAGGGAAGCTAAAGAGCGCCATCTCAAGGCCTGGGAAGAACAAAAGGCAGCTATTCGCTTGGTGAAAGACAAAGCTAAAATGGCTGAAGCCTTTTTAGAGCTGGATGATAATGCAGATGGCTTAGTGTCAGTCTCTGAGCTTCAGTCTCATGCAGAATTGGATTCAGATACTGATGGCACACTTTCTGAAGCGGAAGCCAAGGGGCTGATGGGAGGAGTCGAACAAGTGGATACAGCAACATTTGAGTCCGTTTGGGAAAACATTAAAGACAAGTACCACTCTGAGTCGCAGCCTGAAGAACCTGCACCAGTGGAAACCCCTGTAGATGAAGTGAAGGAGCCAGTTGTAGACAATGAATCTGAGCCGTACCCAGAAGACATCTCTGAGGAAGAAGATGAGgacgatgatgatgacgatgaatATCATGAAGAGGACGAAAAGGCGCCACCCACCATGAAGACTCCAGAGAAGAGTCAAGAAGATGAAGAAGCCATGCCACCCTACGAGGCGGACACCCAAGTGCTTATTGAAGCTGCTCAAAAGGCCAGAGATGATTTTGAGGAGGCTGAAAAAGCACTTCGGGAAATGGATGATCAAATCAGAAACATTGAAAAAGAGCTGTCCTTTGATTTTGGCCCTAACGCCGAGTTCACATACCTGTACAGCCAATGCTACGAGCTCTCGACTAGCGAGTACATATACAGACTCTGTCCTTTCAACCGTGTTTCACAGAAACCCAAGTTTGGAGGATCAGAAACCAACCTTGGGACATGGGGAAGCTGGTCAGGGCCTGAAAATAACAAGTACTTGTCGATGAAGTACGAGCACGGCACTGGGTGCTGGCAAGGTCCAAACAGATCAACTACAGTGAAGCTGACTTGTGGGAAGGAGACCATGTTGACCTCCACGTCGGAGCCCAGTCGCTGTGAATACCTAATGGAGTTCATCACTCCTGCCGTGTGCCAAGAGCCAAGCAACATTGACCTCTCGGCACATGGACACACGGAACTCTAGACCCCACAGTCTGCTTGTTGATGCACGGTTGTTGCACTGTGGGAACATTTTCTCTGTTCGAGCTGTTTGAGAAACTTCTATTAGTTTTGCAGTTTGGATGTTGGGGGAGCATTTAATAacttgtaatttttgtttttgttattttaactgGTGTAAATCTGTTCTTTTCACATTCCATGAATATTGTATGATGTTTAAATAAATCcaatttgacatctgaaacagttttttgttttgttttgtgatatGAGTCCCTATACACCCTGTAgtgtatgaattattattattattattataattttatttttatttttttgtcatccaGAATTAATGTCTGATTGTCCTTCCCCCTCCACTATtttaatacaaacataaataaataaataaataaataaatgtcaaagcata
>TCONS_00050554
ATTAACTAGGCAGATGCCAACTAGACATCTTAAAGACGGCGTTAACGTCTATCAAACTGctggaaaaaaatgcaaattttttaagCTCTTTCGGTCACGCGCCTCTAGTGGGACACAGTGTTTGTTCCTGCATTTGGGCATCATGACCTGCGTGCATCTATTGTTGACTTTGGTCTTTGCTGTGAGTTTGGGGACACCTGTAGAAGTTCATCGACCACGAGGAGTACCACTGTCAAAGAAGCCGTTTTATGAGGAGAACAAGCCTTTCACCTGCCTCGATGGATCCAAGACTATTCTTTTTGACCAAGTGAATGATGACTACTGCGACTGCAAAGACGGTTCAGACGAGCCAGGCACTGCTGCTTGTCCCAATGGCAAATTCCATTGCACCAATGCTGGTTACAAACCCACCTTTATCCCATCCTCTCGTATTAATGATGGCATCTGTGATTGCTGTGATACTACTGATGAATACAACAGTGGAGCCAAATGTGAAAATACCTGCAAGGAACTGGGACGTAAAGAGAGGGAGGTCCTACAAAAGATGGCTGAGATCACCAAAGAGGGCTTCCTCCTCAAACAGCAGCTCATTGAGGAGGCCAAGAAAGGAAGAGGAGAAAAGCAGAGCAAAGTGACTGAAATGCAGGACAATAAGAAACAGCTTGAGGAGAAGGTTGAAGCACTGAGGACAGTGAAAGAAACAGCAGAGCAGCCTGAGAGGGAAGCTAAAGAGCGCCATCTCAAGGCCTGGGAAGAACA
>TCONS_00050555
AGACATCTTAAAGACGGCGTTAACGTCTATCAAACTGctggaaaaaaatgcaaattttttaagCTCTTTCGGTCACGCGCCTCTAGTGGGACACAGTGTTTGTTCCTGCATTTGGGCATCATGACCTGCGTGCATCTATTGTTGACTTTGGTCTTTGCTGTGAGTTTGGGGACACCTGTAGAAGTTCATCGACCACGAGGAGTACCACTGTCAAAGAAGCCGTTTTATGAGGAGAACAAGCCTTTCACCTGCCTCGATGGATCCAAGACTATTCTTTTTGACCAAGTGAATGATGACTACTGCGACTGCAAAGACGGTTCAGACGAGCCAGGCACTGCTGCTTGTCCCAATGGCAAATTCCATTGCACCAATGCTGGTTACAAACCCACCTTTATCCCATCCTCTCGTATTAATGATGGCATCTGTGATTGCTGTGATACTACTGATGAATACAACAGTGGAGCCAAATGTGAAAATACCTGCAAGGAACTGGGACGTAAAGAGAGGGAGGTCCTACAAAAGATGGCTGAGATCACCAAAGAGGGCTTCCTCCTCAAACAGCAGCTCATTGAGGAGGCCAAGAAAGGAAGAGGAGAAAAGCAGAGCAAAGTGACTGAAATGCAGGACAATAAGAAACAGCTTGAGGAGAAGGTTGAAGCACTGAGGACAGTGAAAGAAACAGCAGAGCAGCCTGAGAGGGAAGCTAAAGAGCGCCATCTCAAGGCCTGGGAAGAACAAAAGGCAGCTATTCGCTTGGTGAAAGACAAAGCTAAAATGGCTGAAGCCTTTTTAGAGCTGGATGATAATGCAGATGGCTTAGTGTCAGTCTCTGAGCTTCAGTCTCATGCAGAATTGGATTCAGATACTGATGGCACACTTTCTGAAGCGGAAGCCAAGGGGCTGATGGGAGGAGTCGAACAAGTGGATACAGCAACATTTGAGTCCGTTTGGGAAAACATTAAAGACAAGTACCACTCTGAGTCGCAGCCTGAAGAACCTGCACCAGTGGAAACCCCTGTAGATGAAGTGAAGGAGCCAGTTGTAGACAATGAATCTGAGCCGTACCCAGAAGACATCTCTGAGGAAGAAGATGAGgacgatgatgatgacgatgaatATCATGAAGAGGACGAAAAGGCGCCACCCACCATGAAGACTCCAGAGAAGAGTCAAGAAGATGAAGAAGCCATGCCACCCTACGAGGCGGACACCCAAGTGCTTATTGAAGCTGCTCAAAAGGCCAGAGATGATTTTGAGGAGGCTGAAAAAGCACTTCGGGAAATGGATGATCAAATCAGAAACATTGAAAAAGAGCTGTCCTTTGATTTTGGCCCTAACGCCGAGTTCACATACCTGTACAGCCAATGCTACGAGCTCTCGACTAGCGAGTACATATACAGACTCTGTCCTTTCAACCGTGTTTCACAGAAACCCAAGTTTGGAGGATCAGAAACCAACCTTGGGACATGGGGAAGCTGGTCAGGGCCTGAAAATAACAAGTACTTGTCGATGAAGTACGAGCACGGCACTGGGTGCTGGCAAGGTCCAAACAGATCAACTACAGTGAAGCTGACTTGTGGGAAGGAGACCATGTTGACCTCCACGTCGGAGCCCAGTCGCTGTGAATACCTAATGGAGTTCATCACTCCTGCCGTGTGCCAAGAGCCAAGCAACATTGACCTCTCGGCACATGGACACACGGAACTCTAGACCCCACAGTCTGCTTGTTGATGCACGGTTGTTGCACTGTGGGAACATTTTCTCTGTTCGAGCTGTTTGAGAAACTTCTATTAGTTTTGCAGTTTGGATGTTGGGGGAGCATTTAATAacttgtaatttttgtttttgttattttaactgGTGTAAATCTGTTCTTTTCACATTCCATGAATATTGTATGATGTTTAAATAAATCcaatttgacatctgaaacagttttttgttttgttttgtgatatGAGTCCCTATACACCCTGTAgtgtatgaattattattattattattataattttatttttatttttttgtcatccaGAATTAATGTCTGATTGTCCTTCCCCCTCCACTATtttaatacaaacataaataaataaataaataaataaatgtcaaagcatagatttgaagtgtgtgtgtttttttttttctgaaagattCAGTGTAAACTTCCACAATGGTTTATCAGTGGCAATATTACTTAAGTGTGCAACTGTTCCTCTTGAgaggttttattattttttttatgttttttgtttgatcGTTTTTAATGAAGTAATAAATTCCTGATTAAAGGGTGCTGCTGATTTCTTTAATAAGGTGTACCATATTTTGATTTTAAcccatttactttaaaatgtctggtttctttaaaatgcttgATGAATAGTTGCCAACAGGTCTGGTGCTTTGTTACTTTTTATACGTCAAAAACTCATCTGTGAAACTTTTATCCATTTAGACCAAAGACGCCCAAACTAGGGCTCATGAGCCAAAGTTGGCCTATCATCaaatctgagaagagagggagaatgatggggatggttttgaGATTTTCACTTCAAATTTAATGTAGCCCTTTGTTTTAGTGTTAAAAGCTaagtgaaattaaatgt

Function

symbol description
prkcsh Predicted to enable calcium ion binding activity and kinase activity. Acts upstream of or within liver development and pronephros development. Predicted to be located in endoplasmic reticulum. Predicted to be part of glucosidase II complex. Used to study polycystic liver disease. Human ortholog(s) of this gene implicated in liver disease and polycystic liver disease. Orthologous to human PRKCSH (protein kinase C substrate 80K-H).

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0006491 N-glycan processing biological_process
GO:0001889 liver development biological_process
GO:0016310 phosphorylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0017177 glucosidase II complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-040426-770 Predicted to enable calcium ion binding activity and kinase activity. Acts upstream of or within liver development and pronephros development. Predicted to be located in endoplasmic reticulum. Predicted to be part of glucosidase II complex. Used to study polycystic liver disease. Human ortholog(s) of this gene implicated in liver disease and polycystic liver disease. Orthologous to human PRKCSH (protein kinase C substrate 80K-H).

Ensembl:

ensembl_id ENSDARG00000004470

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050551 False 820 mRNA 0.48 8 46762703 46776249
TCONS_00050552 False 5801 mRNA 0.39 17 46763745 46795783
TCONS_00050553 False 2118 mRNA 0.45 18 46764022 46795289
TCONS_00050554 False 759 mRNA 0.47 8 46764278 46776169
TCONS_00050555 True 2612 mRNA 0.42 18 46764300 46795783

Neighbor

gene id symbol gene type direction distance location
XLOC_025680 pde4a coding upstream 7973 46628885 ~ 46754730 (+)
XLOC_025681 si:dkey-248g21.1 coding upstream 125227 46635527 ~ 46637476 (+)
XLOC_025679 raver1 coding upstream 175697 46559639 ~ 46587006 (+)
XLOC_025677 tyk2 coding upstream 207161 46479705 ~ 46555542 (+)
XLOC_025678 NA coding upstream 217222 46545014 ~ 46545481 (+)
XLOC_025683 NA coding downstream 2729 46798512 ~ 46803047 (+)
XLOC_025684 NA coding downstream 39074 46834857 ~ 46838638 (+)
XLOC_025685 NA coding downstream 311987 47107770 ~ 47109473 (+)
XLOC_025686 dnm2a coding downstream 335129 47130912 ~ 47213115 (+)
XLOC_025687 tnfsf14 coding downstream 449981 47245764 ~ 47258444 (+)
XLOC_025429 BX649540.1 misc upstream 16513667 30248739 ~ 30249036 (+)
XLOC_025668 dre-mir-2195 non-coding upstream 1127517 45635077 ~ 45635186 (+)
XLOC_025667 CR392042.1 non-coding upstream 1156246 45602345 ~ 45606457 (+)
XLOC_025664 NA non-coding upstream 1509171 45246037 ~ 45253532 (+)
XLOC_025662 CR385066.1 non-coding upstream 1874550 44888037 ~ 44888153 (+)
XLOC_025689 NA non-coding downstream 599752 47395535 ~ 47409399 (+)
XLOC_025690 AL928740.1 non-coding downstream 664705 47460488 ~ 47460603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_00107024_00115240 PRKCSH coding CI01000113 null 104117 ~ 116104 (+)