RNA id: TCONS_00050552


Basic Information

Item Value
RNA id TCONS_00050552
length 5801
RNA type mRNA
GC content 0.39
exon number 17
gene id XLOC_025682
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46762703 ~ 46795783 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACGTTTGACgcgtaacatttattattaatgatagcaataaatattgtaataatacgtgcaataatatgtaatattattgTTTGGGATAGTTACTTCTGTATTTAAATGCTTGCCTGGACATTTATTTTCTAAACTCGTGGTACTCAAATCTATTtctgaaaacatgttttatgttttgcagaaaataaaatttataaaaagaaatCTTGTTCAGATTACCGTATGATTAAACCTCAAATGACTACATTGCCCACAATGCCGCATTCCTCAACTTGAATCCACCAATCAAATGAGAACACCGCTCATCTTGTTGACGTACGACGTGGTGCAAGAGCGCTCTACGGAAGTCACGCGCCTCTAGTGGGACACAGTGTTTGTTCCTGCATTTGGGCATCATGACCTGCGTGCATCTATTGTTGACTTTGGTCTTTGCTGTGAGTTTGGGGACACCTGTAGAAGTTCATCGACCACGAGGAGTACCACTGTCAAAGAAGCCGTTTTATGAGGAGAACAAGCCTTTCACCTGCCTCGATGGATCCAAGACTATTCTTTTTGACCAAGTGAATGATGACTACTGCGACTGCAAAGACGGTTCAGACGAGCCAGGCACTGCTGCTTGTCCCAATGGCAAATTCCATTGCACCAATGCTGGTTACAAACCCACCTTTATCCCATCCTCTCGTATTAATGATGGCATCTGTGATTGCTGTGATACTACTGATGAATACAACAGTGGAGCCAAATGTGAAAATACCTGCAAGGAACTGGGACGTAAAGAGAGGGAGGTCCTACAAAAGATGGCTGAGATCACCAAAGAGGGCTTCCTCCTCAAACAGCAGCTCATTGAGGAGGCCAAGAAAGGAAGAGGAGAAAAGCAGAGCAAAGTGACTGAAATGCAGGACAATAAGAAACAGCTTGAGGAGAAGGTTGAAGCACTGAGGACAGTGAAAGAAACAGCAGAGCAGCCTGAGAGGGAAGCTAAAGAGCGCCATCTCAAGGCCTGGGAAGAACAAAAGGCAGCTATTCGCTTGGTGAAAGACAAAGCTAAAATGGCTGAAGCCTTTTTAGAGCTGGATGATAATGCAGATGGCTTAGTGTCAGTCTCTGAGCTTCAGTCTCATGCAGAATTGGATTCAGATACTGATGGCACACTTTCTGAAGCGGAAGCCAAGGGGCTGATGGGAGGAGTCGAACAAGTGGATACAGCAACATTTGAGTCCGTTTGGGAAAACATTAAAGACAAGTACCACTCTGAGTCGCAGCCTGAAGAACCTGCACCAGTGGAAACCCCTGTAGATGAAGTGAAGGAGCCAGTTGTAGACAATGAATCTGAGCCGTACCCAGAAGACATCTCTGAGGAAGAAGATGAGgacgatgatgatgacgatgaatATCATGAAGAGGACGAAAAGGCGCCACCCACCATGAAGACTCCAGAGAAGAGTCAAGAAGATGAAGAAGCCATGCCACCCTACGAGGCGGACACCCAAGTGCTTATTGAAGCTGCTCAAAAGGCCAGAGATGATTTTGAGGAGGCTGAAAAAGCACTTCGGGAAATGGATGATCAAATCAGAAACATTGAAAAAGAGCTGTCCTTTGATTTTGGCCCTAACGCCGAGTTCACATACCTGTACAGCCAATGCTACGAGCTCTCGACTAGCGAGTACATATACAGACTCTGTCCTTTCAACCGTGTTTCACAGAAACCCAAGTTTGGAGGATCAGAAACCAACCTTGGGACATGGGGAAGCTGGTCAGGGCCTGAAAATAACAAGTACTTGTCGATGAAGTACGAGCACGGCACTGGGTGCTGGCAAGGTCCAAACAGATCAACTACAGTGAAGCTGACTTGTGGGAAGGAGACCATGTTGACCTCCACGTCGGAGCCCAGTCGCTGTGAATACCTAATGGAGTTCATCACTCCTGCCGTGTGCCAAGAGCCAAGCAACATTGACCTCTCGGCACATGGACACACGGAACTCTAGACCCCACAGTCTGCTTGTTGATGCACGGTACGACACTCAATTCATACTTTATTAAATTGAGAACAAAAAAGCAAGGCCGGATTTAGCAAGATTTGTTgagtcttaattgttttgttggaCTTTTCACACTTCTAATGTAATGAGGTCTGGAGTTTGCCATAGTGATGACAGCTAGTCTGACTTGCTAATAGTTTCTGCTAACAACACTGGAGtgattgtaaaaaacaaaagcatCTACAACTATTATTTAATGATGCAGATAGAGCTATAAATGGTGTAACTTTGATTTGTTATGCCAACGATTGCAAACCTGTGACccatttgtttcatttgttttcacAAAGTGTTAATTGTCTACATGTGTGGATTTCCTGGGTGTTATACAGCTATGGAAAAATGAAGAGCAAGTTCTCAGTTTGTCTAGATTTATGAGATTTATTAGACACCAATGTTAAAGATGCAAAAGGTGTTtgttttccaaaacattttttgttatgctggttgaaagtctctttacatcCTGATAGCAGTCATTAAATTAAGTGGTCCagatgtatttatatgtgttttattaatatgtggaAGGTGTTGGACCAAGAAAAGTTCATCCAATCAAAATGTTCGGTCCGAACATTATGATAGGCTGTCCTACCTCAGTGTAACCGCAGGGTCTTAGGGTGTATTCATATTAGGTACTGTTGCCTTGAACCGTGCTGAATCGCGATTGTCCCCCCTTCTCCTCTCCCTTTTGGCCTGTACTCGCACTGCATTTTTTATCTAGAAACCTGAGCACGCTTATGTCATTGATGCGCTGTTTAAAAGGAAGAGAAGCtttctcgctcagcacagtggacattgctttaattatattgttttagtcaactgggatgcagtgacacacagtcaaatattttgctgaacagatctgcaacttttgatgctcataaattgAGTGCGcccttaaaaatgtgttaaatctcaaaagctaaattttagacCTTAAGTCTTGAATCTGCATACCTCTGCAAGAAGTACAGCATAAAGGATTATGTCATTGGTCCATTCACTGATGCAGTTCAGACTAGAGGTCTGATTTCCTGCGGTGCAGGAATAAATTTCTAATTTAAACGTGGTAACAGTtagtaactggtgtaatttgatCGGGTGCAGGCGTCTAACAATAAAGCGCTCCCGAGTCCCGATGTTATTTGAGAACACCATATTTGTAATTTCCTCATTCTTTTTAAACATCGATACAGTCActtgcccctttcacacagtgataccggtaaatatctggaaaatttacggaacgactttaccggtatatttaaaaaagcgatgttcacacaggcgaggatgttacggaatttttccggaaaagagcattcacacatccattccaaaataccggtaaattctgacattattcaCCActaatgagctttaaacggctgcacttgtatttgtaaacatttgactacattacaaagtCTGTGGATGATcattattgtgaacaacttcgatgaaaacatatggaggatcactttcgcatgtcgagatgttcataatatgtgcgtgagctggcgctcacaggctgtttacaaacaacaaacaaagggtaaacaaacaacggcttatcataagcatcttatcgatgattatatacacagttggcattaagatgaacatataaacgttatctgactaacttctagcagctaaatgcgtctgggaaaatattcaaaggcttttattctcataaattacgcggacgtaaatgcgtctgactgttctgtttggctaaagcagatgtctcacgtcagcacgttttagacgtgcacgcgctctttccggcaatcttccttttgcattcacacagcgcagcattccggcaaattaccgctaatgttacaacttctctttacggaaaatagccagaacgaatttaccggtattttcaaaaagggcctgttcacacatacagacctttcaggaaaattgccggtaattttccggaaaggtttgtatgtgtgaaaggggctatagacgcaaatggaaaaaaaaaatgtgcgcaATGTGATAATAACTCAGTTTTACCCTTTCATCGCAtcacaaaactgacatttagcctataATCCTTGCACAACATACAGTTTTATCTGTTTTAGTACCCAATTTAAACGTGAGATTTTGGACACCATATCTATATTTAGCGGGAACGGTCAGGTCGAGCAGCCAatgaacaaaggctgaatatgTGGTGGGAGCGTTTAGTTTCAGAATAAAACCAGAATAAAATAGTGATGTCATGCATTCTGGAGGCGTGGCTTTGATGATTTTTAGGGTTGGAGAGACTTTCAGAGCTATTAGGCTAACATTAGTATTTTCTGAGCTTTCCTATTGTaccttttaatgtttgttttatatgtGTCTGAGAACATTTATTCCAGATTTTTAATTGGTAATTTTGGTACTTGAAGCAGTTTTTTTATAGTTaggtaaaataacaaatgttatcACTTGTTGTGAATGAAAATAAGGGTTGTTCTACCAAAtgttgatttctttaaaaataaaaacattgttattttaaaaatgaatataaatagaAATATCATAAGTAGTTTACAtaataaaagacatttaattaaacataacATCAATCAAATTATTTAAGATGGTCAtgcataatttttatatttttgtctgcagttgttgttgttgttgttgttgttaaaaaccTGTGACTTTCTCAAAATTTGAGTTGGCCTAGCTTGCAAATCTGCATTCCATCTACACTAATTATTATGGTGAATTGTCAATTTATGACCACAAAGTGCCAATAATTCTGTATTTCTTTGTTGTGTATGTTCTTCTGTGTTTTTTGTGTGGTcattaaacaatattaatgttTTCCTTTTTCTCTTTGTCTATAGGTTGTTGCACTGTGGGAACATTTTCTCTGTTCGAGCTGTTTGAGAAACTTCTATTAGTTTTGCAGTTTGGATGTTGGGGGAGCATTTAATAacttgtaatttttgtttttgttattttaactgGTGTAAATCTGTTCTTTTCACATTCCATGAATATTGTATGATGTTTAAATAAATCcaatttgacatctgaaacagttttttgttttgttttgtgatatGAGTCCCTATACACCCTGTAgtgtatgaattattattattattattataattttatttttatttttttgtcatccaGAATTAATGTCTGATTGTCCTTCCCCCTCCACTATtttaatacaaacataaataaataaataaataaataaatgtcaaagcatagatttgaagtgtgtgtgtttttttttttctgaaagattCAGTGTAAACTTCCACAATGGTTTATCAGTGGCAATATTACTTAAGTGTGCAACTGTTCCTCTTGAgaggttttattattttttttatgttttttgtttgatcGTTTTTAATGAAGTAATAAATTCCTGATTAAAGGGTGCTGCTGATTTCTTTAATAAGGTGTACCATATTTTGATTTTAAcccatttactttaaaatgtctggtttctttaaaatgcttgATGAATAGTTGCCAACAGGTCTGGTGCTTTGTTACTTTTTATACGTCAAAAACTCATCTGTGAAACTTTTATCCATTTAGACCAAAGACGCCCAAACTAGGGCTCATGAGCCAAAGTTGGCCTATCATCaaatctgagaagagagggagaatgatggggatggttttgaGATTTTCACTTCAAATTTAATGTAGCCCTTTGTTTTAGTGTTAAAAGCTaagtgaaattaaatgt

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0006491 N-glycan processing biological_process
GO:0001889 liver development biological_process
GO:0016310 phosphorylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0017177 glucosidase II complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-040426-770 Predicted to enable calcium ion binding activity and kinase activity. Acts upstream of or within liver development and pronephros development. Predicted to be located in endoplasmic reticulum. Predicted to be part of glucosidase II complex. Used to study polycystic liver disease. Human ortholog(s) of this gene implicated in liver disease and polycystic liver disease. Orthologous to human PRKCSH (protein kinase C substrate 80K-H).

Ensembl:

ensembl_id ENSDART00000185437

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052369 lncRNA upstream 218264 46545014 ~ 46545481 (+) True XLOC_025678
TCONS_00050524 lncRNA upstream 1157288 45602345 ~ 45606457 (+) False XLOC_025667
TCONS_00052768 lncRNA downstream 2729 46798512 ~ 46803047 (+) True XLOC_025683
TCONS_00052769 lncRNA downstream 39074 46834857 ~ 46838638 (+) False XLOC_025684
TCONS_00052770 lncRNA downstream 41769 46837552 ~ 46838638 (+) True XLOC_025684
TCONS_00052771 lncRNA downstream 311987 47107770 ~ 47109473 (+) True XLOC_025685
TCONS_00052370 lncRNA downstream 379311 47175094 ~ 47198612 (+) True XLOC_025686
TCONS_00050550 mRNA upstream 9015 46724528 ~ 46754730 (+) True XLOC_025680
TCONS_00050548 mRNA upstream 11200 46628885 ~ 46752545 (+) False XLOC_025680
TCONS_00050549 mRNA upstream 126269 46635527 ~ 46637476 (+) True XLOC_025681
TCONS_00050546 mRNA upstream 176739 46559639 ~ 46587006 (+) False XLOC_025679
TCONS_00050556 mRNA downstream 335129 47130912 ~ 47205728 (+) False XLOC_025686
TCONS_00050557 mRNA downstream 335129 47130912 ~ 47213115 (+) False XLOC_025686
TCONS_00050558 mRNA downstream 335329 47131112 ~ 47212608 (+) False XLOC_025686
TCONS_00050559 mRNA downstream 449981 47245764 ~ 47258444 (+) True XLOC_025687
TCONS_00050560 mRNA downstream 526711 47322494 ~ 47387377 (+) True XLOC_025688
TCONS_00050528 other upstream 1128559 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 1875592 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050507 other upstream 3046830 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050506 other upstream 3048962 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050499 other upstream 3379567 43373895 ~ 43384178 (+) False XLOC_025650
TCONS_00050561 other downstream 664705 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050573 other downstream 2336558 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050578 other downstream 3273812 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050613 other downstream 5824275 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 6033129 52828912 ~ 52829006 (+) True XLOC_025751

Expression Profile

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