RNA id: TCONS_00050550


Basic Information

Item Value
RNA id TCONS_00050550
length 5830
RNA type mRNA
GC content 0.41
exon number 10
gene id XLOC_025680
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46628885 ~ 46754730 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCATCAGTCACCCTTAGCATGGGTGTAGTGGAGGCCATTGATCCGCCACCCTCCCCTGTGCCTGGAGGCTACCGGCTGGCCCACTCCTCCAGCTACAGCCCCCTGCAGGGGAGAAGAGGGTCAGAGCTGGAACTTGGGGCAGCTGCGGATGGGGTGCTGGATGGGGGGAGTCAGGCCACCGAGCGTAGGACCGCGTTTATGGATTTGTTCTGTGAGACCTGCTCCAAACCCTGGCTGATTGGCTGGTGGGATCAGTTCAAGAGGATGTTAAACAGGGAACTGTCTCATCTGTCTGAGATGAGCCGCTCGGGGAACCAGGTGTCTGAATACATCTCCACTACCTTCCTAGACAAGCAGAATGAGGTGGAAATTCCCTCTCCTACACTCCGGGAACGAGAGAAGCCAATGTCTCACATCAGTGGTGTCAAGAAGCTTACGCACAGTTCCAGTCTCACTAGTGCAGCTCTGCCCCGTTTTGGGGTCAAAACTGAACAGGAGGACGCACTGGCCAGGGAGCTAAATGACTTGAACAAGTGGGGCCTTAATATCTTCCATGTGGCTGAGTTCTCCAATAACAGACCTCTAAGTTGCATCATGTTTGCTATCTTCCAGGAAAGGGACCTACTGAAGACATTTCGGATCCCAGTGGACACGTTTATCACCTATGTGATGACACTGGAAGACCACTACCATGCCAATGTGGCCTATCACAACAGCCTACATGCCGCTGATGTCACACAGTCAACACATGTGCTGCTTTCCACGCCAGCACTGGACGCTGTTTTTAGCGATCTTGAAATCCTGGCTGCATTGTTCGCTGCTGCCATTCATGATGTAGACCACCCTGGAGTTTCCAACCAGTTCCTAATCAACACCAATTCAGAACTGGCATTAATGTACAACGATGAATCTGTACTGGAGAACCACCACCTGGCTGTAGGCTTCAAGCTTCTGCATGAGGAGAACTGTGACATCTTTCAGAACCTCACCAAACGCCAACGGCAGAGTCTGCGCAAGCTGGTCATTGACATGGTTCTGGCAACAGATATGTCAAAGCATATGAGCTTGCTTGCAGATCTTAAGACAATGGTGGAGACCAAGAAAGTGACCAGTTCTGGAGTGTTGATGCTGGACCATTATAATGACCGAATACAGGTCCTGAGGAACATGGTGCACTGTGCTGACCTTAGTAACCCAACCAAGCCCCTAGCAGTGTACAGGCAATGGACTGAGCGCATTATGGAGGAGTTCTTCCAGCAGGGTGATAAAGAGCGAGAGCGTGGGATGGAAATCAGCCCCATGTGTGACAAACACACTGCGTCCGTGGAAAAGAGTCAGGTGGGATTTATCGATTATATTGTGCATCCCCTGTGGGAGACCTGGGGGGACCTGGTCCACCCTGATGCTCAGGAAATTTTGGACACCCTTGAAGACAACCGGGACTGGTACCAAAGCACCATTCCTCAGAGCCCGTCACCACCACCTGACAGACCAGATAATGAGCTTGAGTCCTGCAGGAACAAATTTCAGTTTGAGCTCACCTTGGAGGGAGAGACAGTACAGGACGGTCCTCCCAGTCATAACCACATAGTCATCCATGATCAGGATGAAAAGAAAGACGATGAAGAGGCAGAGGAAGCTGAGGAGGACGAGGCAGAAGAGAAAATGGAGGACGGGGAGGAGGTGACAGAGGTAATGGTTGAGAGGTCAGGACGAAGACGACTGCAGGTTCAGTCAGTAGTTGAGGAGGAAGACGAGAGACAGTCGGATGAGAGCCCCGTAGAGGAGACGGAGGAGGAGGAAAAGTCGTCCTCACCAACTGATGATACGTAATACTGAAGACTCAAGGAACAGCTGTTTGGCCCAGGGGGCTAACTAAGGGCGATCCTTCTAAATATTCTGTCCCTACACTCTGACGTTCACATAGGACTCTTTTCTGTTTCTGATAGCTAGACCATGAACAGAATAAGTCTTGTGTACCAATCCAATaagacatttaattttatttttcaaaaagggaacaaaataatattgatatCAGAGAAGTATTTAACACAGCAACTGTAGATTTTGAGTGCGAGCTGGAGTCCATCCGGCTGCAGGAAAGGTGAGGTTTGATAGAGAAACTGAATTACGGTGGGGTTTGTAAAGGGCCATTACGTCAGTGTAGCACTCTGGAttttccacacatacacacattcacagacgTATGTGATTTTATCCTAAAATAACAATATCATGCGATACATGCAAACACAcggctgtgtgtctgtgtatgtgttcaGGGGGCTTGGATCTGAAAGGAATATCTTTGGAAAAAGCCATCAAAAAAGGAGCATCAGTGTCAATAATCCGTTTTTAAAGCATTCTAACAGGGACTTTACGTGCCGAGGGAAATCTGAGAGACTTCTTGTGCAATTCTGACCTAAAGTTTCATCTGCTGGGAGtaacatctgctgttcaaaaagACTGCAGAGAGACAAGGGAATTGATTTGCTTGTGGGTCCCACCCCCTCTTACCCTTTACCCAGGAGTGCTACCAGTGCAAGATGGCCGTGTGCCTTTCTGAACCACCAGCTCCACCTCTGGAGCTGTTGTGAAGCAATGCATCGTGGGACAGGAGTGTCTGCTTTTGTCTTCATTTTTGATTGTCTCTTTCTCTTTTTAAGCAATCTATCTCCATTGAATATGGTTTGTGCCGGTATGGAGCGTTCACGTTGTCTTGTGATGATTCCTGCTCTCATTCGTCAGTCTTCCTTGATCACTTTCAAGCCAACCGATCATTTAGGGCTTAGATTAGAATTGATCAATTGGTCACTGCTCACGGTTTTCCatgtgaataattaataatagtcaCTTTCAGAGGATAAGccatgggatgtgttgaaaacatATGTTTTGCcttctttttgtttgattttgtcatATCCATTCCTGCCAAATTGATCTCCTCAATTGCAGCACACATTCGCACACATTCTCACCTTCACCCACTCACGCGGGTAGTACATTCTCTTTCTACAAGACGCTACATTTTGTTTTGCCAAAGGAATGAGTGCTTTGCTAATAAGTTGGAGAAGCCTCTCCAAAAGGCTAAACTGAAGAACAAGGCATATTTGTTGGTAGTTACGCGCAGCCATATTGAGTTTCATGCTTTTTGCCTTAATGTCAACTGCAGGGTTTCTACCTAGCACATTGTGAAACAATAAGATGTTGTTGGCATTATATCCCAGACCATTCGTTTCGTGTCTATATGCCTTGCTAATAAATGTCTGTCGATACAAAATAGCTTCACCTGCAGGTGTAGGGTAGTTTTCCTGCATGGCAATGCTACCATAACAAAGTGAAGACAGAGAAAAGAAGGTCATACCATTGCTGTAATGTGTTAAGTGTCTGGCATCTTTTTGTGATGTCTGTTCTACCAATTTTcaaagggagaaagagagaaacagaACATAGGAAAGTGAGAGAAAGTAAGAAAACGAGAGTGAGTTCTCAGGTTGATGTTAGATTTGCAATATTGCCTCTCTCTCATCTCTCAGAATCGTTCAGTTTGGGTGGCTTCAGTTCAGTTGAATAAACAAATTgttgatacagttgaagtcagaatttacaGTTtaactcaaaattattagcccctctttgattttttttcttttttaaatatctcccaaattatgtttaccagaacaaggacattttcacagtatgtctgttaatattttttcatatttgttttattttggctagaataaaaggagcttttaatttttaacaccattttaaggtcaaaattattggcccctttaagctatatatttttcgatagtctacaaaacaaaccatggatatacaataacttgcctaattaccctaacctgcctagttaacctaattaacaaagttaagcctttaaatgtaactttaagctgtacagaagtgtcttgatctagtatatctagtaaaatattattttctgtcatcatggcaaagataaaataaatcagttattagaaattagttattaaaattattatgtttataaatgtgttagtTAAACattaattgggaaaaaataaacagggggctaataattctgacttcaactgcgcgtatgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgcgtgGCAGCGTTTGTAAGCATTACTCTGGAAAATATTATGACAAGCTAGTTTCTGCTGGTCAGTAGCTTAGCTTTACACAAGCCTGTGCCTGTCAGAGCAGTAACCTGAGGTTATGTGTGATAGCTGTACTTGTCTGTGACAGAATTAGAGGTAAACGTTTTTATTTGGCGGACCACCGATAAGGGTCACACGAAGAGGTTTGTGCAAACTGATGACATTCCCATATACATTTGTCTTACCTTAAATTGCTTTGTTGTGTGGCTTTTGGTTAATGTTGTGAGCACTACGCTAACAAATAATATTTGCCATTTTAACACGACACTGTAGCAATTGTTTCTTATTAAGAACTTATTCAAGTTAATTCCTTGCTGCCATTCTTTTTGGATATCAAAAAGGAGAAACAAGTGTTTTCTTTGAACAGTCTgtgtacagtttttatttttgtatcattCTGGTTTGATGGTTTGAAAATCAAAAAGAACTGCTATCTGATATAAATAGTAGACGAATCACTGCTTGTTTTGTATATACTGTAATGTTGAATTGTAAATTTGAGATCTCTCAGAATCAGTCACTGTCACAATGAATCACTTTTAGTTGTAATGAACTGTAGTTGAATTGTGGATTTTCATAAGCACCCCCTTTCTTTCTGCTGTCATTCCCTTGCCATTCTTTTGGAGGGATTTTAGGCAACCTCCAGCAGTTTTAAGTGTGACTTTTGAATTCTATTGGAAAAGAGACTAATCATCAGTTATTTCGGAAACTTGTCTTTACCAGCACTTTAATTTTTTCTGTAGGACTTTGTTTGCGAGATGGCTGATATCAGGGGGAATGGTATATGTATAGAGAGAGGGGTGTATAGCATGGCACAGGGTTAGCACTTTAAATGGCTCGGTCCAAACCTCGTTTTTTGGTCCTCAATGCCATTGTCTGCAAAAGCACTGAGCAACATCAGCTACTCTGTGTCAATAATCTGCACTGTAATGGCTTTTAATAGGGGTTTTAAATACTTCTGTGAGGTTAATGACCATAATGAAAGATGACGTGGCTTAATCAGAGAACAGTTTTACTTTGTACTTTGAAGTCATGCCTCATGAGACTCTCCAATGAAATTATTCTCTGGGCTTTAAATAATATGTTACTTGTTCACAAGTTATGGTAATAATATAAAACGAAAAAGAAAACACAGGAAAATGATTGTAATATTTGTACGTTATATTGCTGTAATGTGTATAATGTGTccaagttattttatattatattatttttatgaaagGTTTTCCTCTGAGAGAACTGAGTTGTCATTTTgtgaataaaatgcatttaataagcaaacagctatatataaaaaaaacaaatatataaatatataccagTATATTTTTTCTTTCACTGTTCAGTACTGTAAAGTGtgttgaaaatacaaataaaggacgatttttctaataaaagtatctgtatttttcttttttttttttgccccatgTCCAGCTTCATGTGACCGTATTTAAAAGAATATTACGCTTAGAAATTATCTGCTTAGAAAAATACAGTATTAACTTAAACAATG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131125-7 Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in signal transduction. Predicted to be active in cytosol; nucleus; and perinuclear region of cytoplasm. Is expressed in oocyte and oocyte stage V. Orthologous to human PDE4A (phosphodiesterase 4A).

Ensembl:

ensembl_id ENSDART00000181358

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052369 lncRNA upstream 179047 46545014 ~ 46545481 (+) True XLOC_025678
TCONS_00050524 lncRNA upstream 1118071 45602345 ~ 45606457 (+) False XLOC_025667
TCONS_00052768 lncRNA downstream 43782 46798512 ~ 46803047 (+) True XLOC_025683
TCONS_00052769 lncRNA downstream 80127 46834857 ~ 46838638 (+) False XLOC_025684
TCONS_00052770 lncRNA downstream 82822 46837552 ~ 46838638 (+) True XLOC_025684
TCONS_00052771 lncRNA downstream 353040 47107770 ~ 47109473 (+) True XLOC_025685
TCONS_00052370 lncRNA downstream 420364 47175094 ~ 47198612 (+) True XLOC_025686
TCONS_00050549 mRNA upstream 87052 46635527 ~ 46637476 (+) True XLOC_025681
TCONS_00050546 mRNA upstream 137522 46559639 ~ 46587006 (+) False XLOC_025679
TCONS_00050545 mRNA upstream 157355 46559639 ~ 46567173 (+) False XLOC_025679
TCONS_00050547 mRNA upstream 158134 46559719 ~ 46566394 (+) True XLOC_025679
TCONS_00050543 mRNA upstream 168986 46479705 ~ 46555542 (+) False XLOC_025677
TCONS_00050551 mRNA downstream 7973 46762703 ~ 46776249 (+) False XLOC_025682
TCONS_00050552 mRNA downstream 9015 46763745 ~ 46795783 (+) False XLOC_025682
TCONS_00050553 mRNA downstream 9292 46764022 ~ 46795289 (+) False XLOC_025682
TCONS_00050554 mRNA downstream 9548 46764278 ~ 46776169 (+) False XLOC_025682
TCONS_00050555 mRNA downstream 9570 46764300 ~ 46795783 (+) True XLOC_025682
TCONS_00050528 other upstream 1089342 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 1836375 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050507 other upstream 3007613 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050506 other upstream 3009745 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050499 other upstream 3340350 43373895 ~ 43384178 (+) False XLOC_025650
TCONS_00050561 other downstream 705758 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050573 other downstream 2377611 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050578 other downstream 3314865 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050613 other downstream 5865328 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 6074182 52828912 ~ 52829006 (+) True XLOC_025751

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000113_00081245_00102196.mRNA True 3818 mRNA 0.50 19 CI01000113 80600 ~ 102729 (+)