XLOC_025664


Basic Information

Item Value
gene id XLOC_025664
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 45246037 ~ 45253532 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052767
TTCTGCTAGCTAACACCGTGGCTAGCTAGGCCCTTCCAGGCTAACCGTTTGCCATGACAACGAAATGACTGGCAAAAGTTAATTTCCACTGGGGAACGTGCCCGACACTAGCATTAAAGTCAAACGCGCTTGACTGGCAAACGCGGTAGGCATGCAGATCACTGTCATAATACGGGGCAGTTGTTAGCTTGCGCTGCTATCGCGCTAGCCGTGACCGCTTCTTCATGCATAATTGAACGGTGCACTGCAACTCCACCCAGGCAATGACGCTCTGCTCCGACCGCTAAATGTTATGCTTACGCGCTGGGCTCGAAGGCGAAATACTTTGTCTTGTTTGTATATTTGGATGTGACATCCAGCCGTCGCACTGTCCGGCGCGAGCCCGATGCTAGAGAACAGCAGCAGATGCGCGCGCCCGACCGAGATGAAGAGTTCGGCGAGCAGCCCAAATCCGAGCGGTTTTGCGTGAGCCTCTCCTCGACTCAGCAGTTTTCTTGACAGCCGGTCTGTCGGTAAATATCTAGCGGATTCCTATAGTGATATTAGCGTGTTGGTGTGCCGTCGCGTCCTCCAGCGCTTTCCTAAAATCACTGAACACACTGCAGGGCGGCGGTGCGTCGTGACGTCACAGAGCAGCAGCAGCCTCGTTCAGAGCGCCGCATGATGTATGTCATCCAAGATCAGAAGCAGAAAATGAGTCATTTACTTCAAAGGCACGTCGTTTATCACCTTTTCATatcaattacttctGCCAGTTTGTCCAATAGAAATGTGAGCCCGGTGCAGGTTGGATGGAGGATTGGCTGGCTTGTTGCTCAGCTGAACAGTGAGTTAGAGATCTGCACTGGACAATTCTTTTAGTCCCGCTCCTGCAATGTTTTATTCCACACTCGACTGCTCCCGCCGTATATTCAGCCTTTGTTTACCCGCTGCCCGACCTGCCCTGTTTTCTACCCCAgaggttttcaaacttttaggacacACACACTTCCAAGTTTGTCCAATTTCACTCACGCCCCCCAGGCACCTCTTCCTCGAGTCAAAATTATAATGCATGAGCAAAAATCATTTACATATTACTTGCTGCTTttaaagtgtgtagaattaattaCACTGAAACATAAATATACAGCTTACCTGATTCAGTGTGATAGCTGAGTCTGTGaggacaacatgctaatttgtggaCGGATTCCTGACACGACTAACTGTAAATCatcttccactgtcaataagcatGAGCCACAGCGTACTTGCTTTTGATGTACGTACatacagaaaatgctgcttcgcaAAGACAAGTTCAAAGAGCCCTGACAGTGTGGTTGAGTCGAACATTGAATATGTTTACATGGGCAACAATAAtctaatatgattaagacaatattctgattaggggctaccatgtaaacagcgatttttgatgaccttaatctgactgaagtcataattaaactaaacagaaatggaaagaCGTGGAGAATGcgtatattagtggcattactgaagtaaacaccgcaatcaaattattactgtcatgtaggacttttcgtcACGTTTTGTGACAAGATCCATACATGCGGCTGTCAGTagaggaccacacacacacacacacattacgaaatgcaagttttttttttttttttcattcgacGTGCGGTATCAATAAAAACACTCTTCCACTAGTGTTTCATATTCACGtcaaataccccagtttgtcacgggggcatgaatgagtGAAAGTTAAACTGCCGAACTACAGTTAAAGTCGAGAAACTGAAgataaaacacccaaaattacatgagacTCAGGGAATGGATGAGACGCAGATTACATGAGACGCAGGAAATGTAAATAGCTTGGTAatgcaacattcaaaaagcacttcacgttattatattattgtcttaatcagattaaggcaaataacttttactgatgtccatgtaaacgtttaagcccaatggagcgattgtttacaagtgcggAGTCCCgggaaggagctccggatggaaagttttgttttgtgtttatctcatagttaaagttgttgcacgtccgccggttcctgcctcaaaatgagctagtttgagccacttgtacaggaagctttcagaaaaaaacaaaacagcagcgaagaaactcgacacagagacacatttacacctcactgccaactagggTTTTGGAAGTGGTGTTGCAGACCAACAgggacagcgcgcagaagtataaatgcacagctacatgcgttgcctgcgccgttggttacgctggtcacttgacgcagaagtataaaacagGCTTTAGTCAGTAGTCTTCAAAATAAGTGAAAGATcccagaagggcacttttttgtcagacattGTCATTAGCGCTgagtttatttgtatatattttacttCAACGCTTTAATTCTACAGGTGGCTTATAGTTAGCTGTGGAGCTAACGTCGATAATAATATTCCCTCTAGTGAACGCAAAAAAATCATCATCCTAATTTACTCGAGTACACGCCTCAatgtttgaaaacccctgttttACCTGACCGTTCCCACTAAATTTACTTCTGGTTTCTAaaatctgctgtttaaaattgGGTACAACCAAAATatttgtttgcccctttgtgatgaCACATGAGTGCCGCCATCAACCTGAGGttccagtcttgtgactgctaaagggtaaaactttgagGTATTCACATTGCGCAAAGGGTAAGACTTGCCTAATGGGGGTTCCCTAATAGTAAGCTGACCGTTTTCAAGCTGAAGAACAGTGCACCTTCACTTTGCTCTCCCATGTTGTTAAAGCCTGCTTTGGGGACCGTTATGCAGATGATGCACGCAGACTTACGAAAAAAAAGGCACATGCAGAAAGCACTGGTCTTGCGTTCAGCATGCATAATATTCTTGAGCACTGGCTGTACTGGTGCTCATTAAGAATGAGGAAATCACAGAGATGCTGTTCCAAAATAATGTCGGAATTCGGGAGCGatatattgttagaccgcctgctCCCGTTCAAGTTACAACAGTCGCTTCACATTCATTCATGAATTCCCCTGTGAGGCATTATGGGATAGTGTAGCGTCCATTGGATGAACACtacagaatctcgccagaagtacactacctgacaaaagtcatgtcgt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052767 True 3155 lncRNA 0.44 3 45246037 45253532

Neighbor

gene id symbol gene type direction distance location
XLOC_025663 hs3st2 coding upstream 245392 44947355 ~ 45000645 (+)
XLOC_025662 CR385066.1 coding upstream 357884 44888037 ~ 44888153 (+)
XLOC_025661 nsmce1 coding upstream 1168347 44062576 ~ 44077690 (+)
XLOC_025660 NA coding upstream 1192267 44000293 ~ 44053770 (+)
XLOC_025659 BX571715.1 coding upstream 1258751 43955864 ~ 43987286 (+)
XLOC_025665 ube2ia coding downstream 111317 45364849 ~ 45373511 (+)
XLOC_025666 baiap3 coding downstream 147940 45401472 ~ 45539853 (+)
XLOC_025667 CR392042.1 coding downstream 348813 45602345 ~ 45606457 (+)
XLOC_025668 dre-mir-2195 coding downstream 381545 45635077 ~ 45635186 (+)
XLOC_025669 gpr146 coding downstream 433734 45687266 ~ 45717575 (+)
XLOC_025429 BX649540.1 misc upstream 14997001 30248739 ~ 30249036 (+)
XLOC_025654 NA non-coding upstream 1490194 43711067 ~ 43755843 (+)
XLOC_025678 NA non-coding downstream 1291482 46545014 ~ 46545481 (+)
XLOC_025683 NA non-coding downstream 1544980 46798512 ~ 46803047 (+)
XLOC_025684 NA non-coding downstream 1581325 46834857 ~ 46838638 (+)
XLOC_025656 dre-mir-365-1 non-coding upstream 1529122 43716827 ~ 43716915 (+)
XLOC_025655 dre-mir-193b non-coding upstream 1531254 43714699 ~ 43714783 (+)

Expression


Co-expression Network