XLOC_025659 (BX571715.1)


Basic Information

Item Value
gene id XLOC_025659
gene name BX571715.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43955864 ~ 43987286 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050512
CATCCAAATAACTGGGATTGGCATGCGCAATGTGCCTAGTACATACAGATCCACTGTTGATCTAAGCGTAAACTTATCCTACCCTGCCCTACCTTGAGGGCACTTAGTGAACTTTCAGCCCTTACACAAGCAACAACATATGAAAGAAAAAGTAAACATTGCAAATCTTTCATACGTGTTTATACGTCCAGGAGGAAAACAGTCAATCTACACTGACTGCGCGCGTGACCGATGCAGCATTGACTACGTGTGAGTTTGGCTTTGTGAATCGGTTTGCTTTCCTAGATGCTGTTAACATTTACATGGACCAAAAGCCACCATCGCTGAAACTCCGGCATCTTACATGAGGATTTACACGCTGAGCTGATGATGGCGGACATTAGGActtataatgttgttgttttgggAATAGGATTTTTGCTCATCTTTACAGCCTTCACCACCTGTGGGAATATCGAACAAACAGTGGTGAAAAGCTTGAACAGCACTAACTTCACTGGGAGTGGGTATCACAGCCTTGGAATAATATATGGAGTCTTTTCCTTCTGTAATATACTAGCCCCCACTATCGTTGCTGTAATTGGAGCAAGGTTTACGATGTTCTTGAGTGGCATTCTTTATAGtggttaTATAGCTGTATTCATCATTCCATCCACATGGTCCTTTTATTTCACATCAGTGGTCATTGGCTTTGGGGCAGCCATGCTTTGGACGGCTCAAGGACACTTTCTAGTGGAGAACTCAGATGCTTCCACCATCAACAGGAACACAGGAGTGTTTTGGGCGTTACTGCAGTGCAGTATGTTGTTTGGCAATCTGTACGTTTATTTTGATTGGAaaggaaaaactgaaatatcagATAGAGAAAGAAAGATTATGTTCACCGCTCTGCTGGTGATCTCGGTACTCGGGACACTGAGTTTTCTTGCCTTGAGGAAGGTCCGTCAGCTGGAGGAGGCTCTGTCTGAAGAAGAAGGCCAGTCTCTGTTATCAGCCAGATTCATATATAAACAAAAAGCAGCCTCTGCTGTGACAGAAGCTAAAACAGAGTTAAAGACGATTGTGGAAATCTTTAAATCCAAAACCATACTGTTGTTAAGTTTCTGCATGGCGTACAGTGGTTTGGAGCTGTCGTTTTACAGTGGTGTTTATGGGACTTGCATTGGGGCCACAGAATACTTTGGCAATTCAGCAAAAGGCTTAATCGGCATCTCAGGCATTGTGGTTGGAATCGGAGAAATCGTTGGAGGTGGATTGTTTGGCCTGGTGTTGAAGAATAATCGTTTCAGACGCACATCGGTAGTCTTCTTAGGGATGGTTGTCCACTTTGTGGCCTTCTATCTGATATTCCTCAACATACCTGATGATGCTCCTGTGGTTCTACAAACAAGCTCACAGCATAATCCATATCTGGCACCAAGTGTGTCGATCGCTCTGCTGTGCAGCTTCTTGTTGGGTCTTGGCGACAGCTGTTTCAACACTCAGCTCTACAGTATTCTGGGCCGGGCGTATGCTGAGCAGAGCGCACCTGCCTTTGCCATATTTAAATTCATACAGTCTGTTTCTGCAGCTGTGGCCTTCTTCTACAGCGGCTACGTTCTGCTGACCTGGCAGCTCCTCGTGATGGTCATCATGGGCTTCATAGGGACGCTGTGTTTCTTCATGGTGGAGAGGATGCAGAACATGTCCGCTGACGCACAGGAATATTAAACTGAGGTCTTGCTCAGGACACACATTTCAGTGTAACCGCAGCATCATATCAAAGCAAGAGGCCTTTGACTCACTGATTCTGATGTGGAAATTCCCCTGACTTGTATTTCATGATTGAAAATGTCAGATAAGAGCTGCTTTtcctacattaaaataaaaattgttttgttttgcgttttgtTTTTACCGAGAGTGTGGGTGTATATACTGCTATTGAAAACCACTTGTAAATACACTTGTTATTCAGGTCTCAAAACCatggttatgattattaaatatttattcctTTACTTTTTCTAAAGGTAAATGGATAGTTCtgccaaaactgaaaatgctacgatcatttactcaccctttacctgttcaaaacctgtatgagtttcctttttctgttgaacatgaattaagatgttttgaagaCTGCTAGTAGCTGGCCCCCAGCAAAACAAGTGAAAACTTCCAtagttaattagtattttttctctactattcaccttattctttgtcgacgagcgggcacagccatttgaatctttttggctcaagacttccggtctcattcacttccattcatttttagacattaaaaattgctcgtttcgctgtttgatgttgcagaCTGacatttccttattatattattctacgtGGTCTATATAGTCaagcaaacacttgtttgtagagcaagtagtttgaccgttttttgcagtttattattcctagacatttctcccataggcgactaaatcagaagttctaaaacaatccgaaaaacaggcgcacttccgcattttagaataaggtcaatagaaatcAAACCAAACAGCTAATATCTTTCCTCGTATTCAAACTGTAAAAGGAcatgtggaaaaaaatgtttttcatttttgagtgaactatcctttttaaacatttgtatGTAAGCATGTCTGAAAGCATGCCACCCTGTTTGTTATTTAATGCAGAAAAAGTGCTCAATAGTATATTTAATCTTTAATTTGGAAGCAAATAGTTTAAAGAACAAAGCAAAACTTACAGTTTGCTCAGAAACACAAAATTATAAATTCAGAGAAACAGAGTTTTCTAGTGGTCTCTTGATTTGCTTCTGTAAATCtgtatatacacatgcacacacttgttttgctggtttatgaggactctccattggCGTAATATATTTTATACTCTTATAAAATGTCTCTCTAAGTTAATGAAAAAGCATGTCTCAGGGTCCTGcagtttaattcttttttttttaggatcTGTAACTCTAAAATGCATATCAGTCCACTTTCAGATTTGATGTTTTAAATGccttcattgttattattattattattatagtttgttTGGTGCTATTTTTGTGTGGTTACATTGTGAAATTGTGCAGTTGTAAAATCAGGTAATCTTTTTCAGTGTTGGCGAAGGTGTGATCACATTTAGCATGAAAACTCAGTCACAGAACAGGCACAACTGGTTTAAACAAGAATGTTTAGATGAAGGTCTGCTTGATTATACACACATGTCCAAAGTGCTGTTTGTTAAAAACCAGTGTTGTGTTTCTGAAGCAACAGAGCTCTTCAGGCATATTTATTCCCTGGCTCCTTTAATATTTCACgttctgtaataataataaagatgacTGAAGAAAGTTTTACACTACATGTTTCATTATCAAGTGTGTTGAGCATTACACAAATCCGTTTCATGGTATGAAAGCTGCAGAAAGCTGTTGTAATTGTTTGTCTGTCTTTTGTTCAGCATTGGCCGTGCGTTATCTTTACAGGTGTAATGTAGATCAGAAtgtatttaatgtgtatttattgtgtCAGAAAGCTTTCAGAAGGTGGCATCTTTTGATGTTTGGATGAGATCATGCCTTTCTACATTCGTAGTATGTAGCCAATAAGAAATGTACTTTTATTAGTCAGCAGCCATGCAATAATATgtgtcatattttaaatatttgtgcttaaaaataattttttatacttGTTAATTGACAATCAACATGAAACATTTTAAGCTTTTGGgttttatgtgatattttttaatgcatttcaatAAAGAAAGACTGAATGTGTTCATGTCTATTTATTTGCAACTACACTTATTCGCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104568

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050512 True 3829 mRNA 0.39 15 43955864 43987286

Neighbor

gene id symbol gene type direction distance location
XLOC_025658 litaf coding upstream 124834 43825785 ~ 43831030 (+)
XLOC_025657 zc3h7a coding upstream 147542 43774369 ~ 43808322 (+)
XLOC_025654 NA coding upstream 200021 43711067 ~ 43755843 (+)
XLOC_025656 dre-mir-365-1 coding upstream 238949 43716827 ~ 43716915 (+)
XLOC_025655 dre-mir-193b coding upstream 241081 43714699 ~ 43714783 (+)
XLOC_025660 NA coding downstream 13007 44000293 ~ 44053770 (+)
XLOC_025661 nsmce1 coding downstream 75290 44062576 ~ 44077690 (+)
XLOC_025662 CR385066.1 coding downstream 900751 44888037 ~ 44888153 (+)
XLOC_025663 hs3st2 coding downstream 960069 44947355 ~ 45000645 (+)
XLOC_025664 NA coding downstream 1258751 45246037 ~ 45253532 (+)
XLOC_025429 BX649540.1 misc upstream 13706828 30248739 ~ 30249036 (+)
XLOC_025653 NA non-coding upstream 268207 43685664 ~ 43687657 (+)
XLOC_025652 CU138533.2 non-coding upstream 302073 43650041 ~ 43653791 (+)
XLOC_025667 CR392042.1 non-coding downstream 1615059 45602345 ~ 45606457 (+)
XLOC_025668 dre-mir-2195 non-coding downstream 1647791 45635077 ~ 45635186 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_01970499_01979300 NA coding CI01000046 null 1969991 ~ 1979300 (-)