XLOC_025652 (CU138533.2)


Basic Information

Item Value
gene id XLOC_025652
gene name CU138533.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43650041 ~ 43653791 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050504
CTGTGAGAACCTACTTTCCGCTTTCGAGCGCATCGGGAATAGCGTTGTATGCGGCGAGATGTGAATCGTGTCATCGATGCGGATCTCGGAgtttaaaaataacaaagaaaacagTCGCTTCTCCACCTCTCCATGGCTGTCTCTCGCACTCCTGTGCCCGTGTGCGAGtgagcgagaaagagagagaggggagcTGGAGATGTGCAGCGCCGCGCACGGCCAGAAATCACACTGCCGCCTggagaaaagaaaaatcaaggcGAGGAAACCCTGGAGTGAGAAGACGAAGAAGAAGAGGAGCGCCTTCAATCCTCTTACGCCGCACTCGAAGGTGCTGTCAGTCTGCAGTTGCTAATTAAAAGGTTTGGAAGGAAACGGCGTAATTAAAGTGATGTACACTTGATGATGAGACGCGTTTGGAGTCTTCGGGAAGAGCTGTTTTAGGCTAGGGTGAGCGGGTCGCCCCCTTATGGACGCCGCCATGTTGACATCACATGACCAGCTGTGTTGACCGTTTGTGTTTATTACTTTACGGGCGCtgatttaaacaaaataagctCAATATACACTCTATGGTgtgtaaagtaaataaataaaagcaaaaggtATTGGGGATTTCCTGTCAGGGCTAGTTTACAGACATTTCCATtaaatgggatagttcacctaaaatgaaaattcccTCACCATTTTCTtccactcaagtggttctaaactttttatgattttatttcttcagttaaacacaaaacaagatattctgaaggatGTTGAAAGCAGTCACTTGACATCCAATGTATGAacatacaaacaataaaacacCCTAAAACGACAGCAGTGAAAACACACTGTTAATCGGCTATATGCATACAGACttcattttcagccaggcagcccaagggggCTTCCtctgaactgtctttccattacaaaactttcacatttaagatctgatttctataaaaatcagcgatcttcactgcctgttaaatatatatgatatgaagtgggtctcagatcggacaagaagcactgcattaaattccatttccccctgcTAACAGTTTATTTCACCCCAACATTTTCAAAGAAATTTCTGCGCCAGCCTAATGCTGCGGTTACAACGGTCTTTCATCTtattttatgcttgagcaactaaatgattGCTAAATGattagtctatttaactgaatgtattgtaatgacaacatcgatgctgtaaaaacaaccatgtgaaattgaaaatactcacattaagctttcaccggaagtttatcgttggctttaaaactcttgCTGTGCATTATGACAGAAGAAGGGGGGTGAAAAGTATTCCCCTTAATGTCAAATCAAAtgcaatttataatttaaaaatgcaggTGAACACCACCTGTGAAAATGTacttaaccctttgactgcccaatctaccaaatggttgaccttgTTTTGACTGtttaagtcatttaaataatggtttacacgtacacacagcattgttcatttacaaaacaatcaagacataatcctgttgcactacttcacttgattttggttttattgttaaaaaaaaaacatgttaatctgaaatattttatggcatacttcaaaaaataaaggtgatttagtattcaaaaatgttttattttgattattttttaagtaaattggTTTTACACTTCGTTTTCTGATTTTTCATCGTAAATGTAtaattccggtacttttaccataaactgacatatcaaccatttagtagagattgatattttagaaattatggaaaaaaattgcattaagtgtgttaactagtgacattaagagaaaatattttttttcttgttggggCAGTTCAAGGGTTAATGTAGGCCTACATATGGTTTCTTTACATTATTAACACAGTACATGTACTTACTGCCATGCTTAATTTTAACAAGACTGAAAAACAAGACTGTGAGGGATTGAAGTACATTCTTTACAATGGATTGTAtgcttatatacagttgaagtcaaaattattagtcccctttttttctttttttatattttttccaaattatgtttaacagagcaagaaaatgttcacagtatgtctgataatattttttcttctggagaaagtcatgtttattttatctctagaataaaattagtttttaatttaaacatcattttaaggacaaaattattagcccctttaagctaaattattattattatttttttgatagtctacagaacaaaccatcgttatacaataacttgtctaattaccctaacttgcctaattaacctaattagcctagttaagcctttaaatgtatagaagtgtcttgaaaaaatatccagtaaaatatcatgtactttcatcatggcaaagataaaataaatcagttaatagaaataagttattaaaaatattatgttcagaaatgtgttgaaaaaatctctccattaaacagaaattggtgaaaaaataaacaggggcgctaataatttaggggggctaataattctgacttcaactttatatatatatatatatatatatatatatatatatatatatatatatatatatgtattcagACCTAATGAAAACTAACTATGGTTTTGCTACATATAAaacagatgtttgtttgtttgtttgtttgtttgtttgtttgtttgttaaacaaTGGTAACcacattttaagttaaaaaaaagattttacaaattataatcgATACACATAAAAATGGTTAGCCTACTAAACTACTAAAATAAAACTATGGTTAGTAATATGGACTTAAGGGAGGGTTTTTCCACATCTGAGGAATAGTAAGGGGGTCAGGGGAAAATTTGGGGGGAATAAAagcatcaaaaatgtaaaaatgaataaaaaaaaaactaattatttaattaacttattcaAAAAAGCTAAAACAATCAAAGATCAACCAAGTGCacgttcatttattttcatttggcttagtccctttatgtatcaggggttgtcacaatGGAACGAACTGCTAACTATTcaattatgttttacacagccacaatccagtactgggaaacgcccatacacactcattcacacacactatggccagtttagcttacccaattcacctgtaccgcatgcctttggactggggggaaaccagaacacctggaggaaacccaagtgaacatagagagaacatgcaaactccacagagaaataccaactggccaaGCCAGGATTTAAACcaatgacattcttgctgtgaggcgacagtgttaaccactgagccaacgtgtcACCCGCGCATTAgtgtaaattttaaaatatgaatataaagcagtatattaaataaataatacagaaatatgattaaaatgaacaaataaaacaaattaatttgattaaaactgTTTATTGTGTTATTGTGTTTATTGGTTGTTTGTTGCAAATCAAGAAATAAAAACTAGCTGAAATTTTGCTGACTGAAATCGCAGATTTTGCATCACAGAATCAGAAGTTTTCGGTCATCCTGGTACTGTTTGCCTGATTTATGAGTACTATGAATATactactcagctcacatactCTTTTTTCACAGACATACTGTATAGTAATGAAGTTGGCACATTTGAATGCAGACTTAGACTATTCCCTCACAGTCTCATTCTCATACAGTCAAAATTCCCTGTCTCGTCTGAATATACACCATTGTGCTTTTTCTCATAAGCTTTATAATCACAGTATTGCAATAAAGCTTGACTCA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1904029 regulation of cyclin-dependent protein kinase activity biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102711

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050504 True 3751 lncRNA 0.34 1 43650041 43653791

Neighbor

gene id symbol gene type direction distance location
XLOC_025651 galr2b coding upstream 170992 43460696 ~ 43479049 (+)
XLOC_025650 zfand2a coding upstream 252907 43373867 ~ 43397134 (+)
XLOC_025649 NA coding upstream 321282 43200317 ~ 43328759 (+)
XLOC_025648 NA coding upstream 514548 43102010 ~ 43135493 (+)
XLOC_025647 si:dkey-43p13.5 coding upstream 557779 43086548 ~ 43092262 (+)
XLOC_025653 NA coding downstream 31873 43685664 ~ 43687657 (+)
XLOC_025654 NA coding downstream 57276 43711067 ~ 43755843 (+)
XLOC_025655 dre-mir-193b coding downstream 60908 43714699 ~ 43714783 (+)
XLOC_025656 dre-mir-365-1 coding downstream 63036 43716827 ~ 43716915 (+)
XLOC_025657 zc3h7a coding downstream 120578 43774369 ~ 43808322 (+)
XLOC_025429 BX649540.1 misc upstream 13401005 30248739 ~ 30249036 (+)
XLOC_025643 NA non-coding upstream 894873 42754657 ~ 42755168 (+)
XLOC_025642 NA non-coding upstream 1140211 42507482 ~ 42509830 (+)
XLOC_025640 NA non-coding upstream 1152275 42490459 ~ 42497766 (+)
XLOC_025660 NA non-coding downstream 346502 44000293 ~ 44053770 (+)

Expression


Co-expression Network