XLOC_025643


Basic Information

Item Value
gene id XLOC_025643
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42754657 ~ 42755168 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052757
ttTGAAACCACCCGAGTCTGAGAAAAtcGCAAAACGTCTGAACAGATGAATCCGACTGATTAAACGTGATCCCGATGCGTTGGGAAGAAGATGCGTCTGGACACTCTGCAAATTGCCCATTCACCTACAATCAGTCTACATAGCATGAATATGGGGTTTTATTATATTTGCGCTGAGCTGTCTAAACTGAGGCTAAATATTTTAAGTAGCTGTCAATATTATGGAGAGCGGACTCTAATATACGTAAATGGGTTTTGGGGGAGAGGAGAAGACAGGCTGTGAGGTGAGTTATTGGTTGTGATTTATTCAAATCCTCCATTTATTTGCTAAGCCTATTAGATAGCGAGGAGAAAGAGGAGGCTAGTTATAATTCTGAAGAGGAAACGTTTAGTGGCAGTCGATATAATGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052757 True 409 lncRNA 0.41 2 42754657 42755168

Neighbor

gene id symbol gene type direction distance location
XLOC_025642 NA coding upstream 244827 42507482 ~ 42509830 (+)
XLOC_025641 BX537305.1 coding upstream 250142 42497814 ~ 42504515 (+)
XLOC_025640 NA coding upstream 256891 42490459 ~ 42497766 (+)
XLOC_025639 NA coding upstream 547683 42194210 ~ 42206974 (+)
XLOC_025638 mrm2 coding upstream 625592 42126062 ~ 42129065 (+)
XLOC_025644 psmg3 coding downstream 163678 42918846 ~ 42920062 (+)
XLOC_025645 tmem184a coding downstream 168107 42923275 ~ 42957609 (+)
XLOC_025646 ints1 coding downstream 244109 42999277 ~ 43060971 (+)
XLOC_025647 si:dkey-43p13.5 coding downstream 331380 43086548 ~ 43092262 (+)
XLOC_025648 NA coding downstream 346842 43102010 ~ 43135493 (+)
XLOC_025429 BX649540.1 misc upstream 12505621 30248739 ~ 30249036 (+)
XLOC_025636 NA non-coding upstream 791911 41954893 ~ 41962746 (+)
XLOC_025630 BX537310.1 non-coding upstream 1254132 41500409 ~ 41500525 (+)
XLOC_025649 NA non-coding downstream 445149 43200317 ~ 43328759 (+)
XLOC_025652 CU138533.2 non-coding downstream 894873 43650041 ~ 43653791 (+)
XLOC_025653 NA non-coding downstream 930496 43685664 ~ 43687657 (+)
XLOC_025654 NA non-coding downstream 955899 43711067 ~ 43755843 (+)

Expression


Co-expression Network