XLOC_025638 (mrm2)


Basic Information

Item Value
gene id XLOC_025638
gene name mrm2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42126062 ~ 42129065 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050487
TCCGACAGAAACAGAACAGGATCAGTTTGTTTTATAGCATTTGTTTGggtaggatttttttttgtaaaaaaagtcaCTAATAAATAACATAGCTTTAATAATGGCTAATGAAATTATCTGATTGATGTAAGCTTactttttaacaaacttatcttCAAATTAAAAAGTATTTCCTTTGTAAACAGAGATCCACCGCTTTTCCACATATGTGTAAATAGCAAACGCACAAAGTAATGTTCAaattaatgtttctttaaaatttttCAACGACTTTTAAGCCGTTTAACATAAAACGTTAATATCTAAAGTAAGGTATTAACCTTAGTATGTTCAACCTCAGATGTTGGATGACTCTGCGCATAGTGTACGCATCGTTGACGCGCTGACACCATAGTCGCCCACGTGCTTCCTTGTTTTCATGCACTTAATTTCTACATGTGATGTCGTCTCTAGGTCACTTAGTTCTTTATTAATAATGTGGAAACGCATACAGAGGTCGTGTATTCACATGTCAGCGGTGTGTCTGAAGAAGACTCCTCTGCATCTAAAGGGCAAGAGTACTGCTGATAAAAGGTGGTTGATTCGGCAGCTCAGTGACCCGTTCGTTAAAGCTGCTCACGAGCAGAATTACCGCTGTCGAAGCGCCTTCAAACTGATCGAGATGGACGACAAATACCGACTTCTCAAACCGGGTTTTACTGTCATTGACTGCGGTGCTGCACCCGGTGCGTGGAGTCAAGTTGCAGTGCAAAGAGTCAATTCAACTGGAGAGAGCGTGGATCTTCCCAAAGGCAGCGTAATCGGAATAGACATACTACACATTTTCCCGCTGGACGGAGCTCAGTTTCTGACCAATCATGACATCACTTCTCCTTCAACTCACACGGCGCTGGAGAGACTCCTGCCTGAAGCTGGAGCAGACGTCATCCTCAGTGACATGGCCCCCAATGCCAGCGGCTTCCGGGAGCTGGATCACGAAAGACTGGTCTCCATGTGTCTGTCAATGCTGGACTTAGCTGACAAGGTGTTGCGGCCTGGAGGCTCTTTAATTTGTAAATACTGGGATGGAGGTCTGGCTCATATGCTCCAGCAGAGACTTTTCTCTGCATTTCAAGATGTGAGAACTGTGAAACCCAGAGCAAGCAGGAAGGAGTCAGCAGAGCTGTTCTTTCTGGCCCGCATGTTAAAAAAAAGATAGAATTAATTTTTAAGgcaatttaaaatatgaaatatgaataaataattgtatattaaa

Function

symbol description
mrm2 Predicted to enable rRNA (uridine-2'-O-)-methyltransferase activity. Predicted to be involved in RNA methylation. Predicted to act upstream of or within methylation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome. Orthologous to human MRM2 (mitochondrial rRNA methyltransferase 2).

GO:

id name namespace
GO:0001510 RNA methylation biological_process
GO:0032259 methylation biological_process
GO:0005739 mitochondrion cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0008173 RNA methyltransferase activity molecular_function
GO:0008650 rRNA (uridine-2'-O-)-methyltransferase activity molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-5205 Predicted to enable rRNA (uridine-2'-O-)-methyltransferase activity. Predicted to be involved in RNA methylation. Predicted to act upstream of or within methylation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome. Orthologous to human MRM2 (mitochondrial rRNA methyltransferase 2).

Ensembl:

ensembl_id ENSDARG00000075368

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050487 True 1255 mRNA 0.42 2 42126062 42129065

Neighbor

gene id symbol gene type direction distance location
XLOC_025637 snx8a coding upstream 5890 42090418 ~ 42120172 (+)
XLOC_025636 NA coding upstream 163316 41954893 ~ 41962746 (+)
XLOC_025635 lfng coding upstream 199193 41917499 ~ 41926869 (+)
XLOC_025634 chst12a coding upstream 393115 41726360 ~ 41732947 (+)
XLOC_025633 eif3ba coding upstream 401130 41714966 ~ 41724932 (+)
XLOC_025639 NA coding downstream 65145 42194210 ~ 42206974 (+)
XLOC_025640 NA coding downstream 361394 42490459 ~ 42497766 (+)
XLOC_025641 BX537305.1 coding downstream 368749 42497814 ~ 42504515 (+)
XLOC_025642 NA coding downstream 378417 42507482 ~ 42509830 (+)
XLOC_025643 NA coding downstream 625592 42754657 ~ 42755168 (+)
XLOC_025429 BX649540.1 misc upstream 11877026 30248739 ~ 30249036 (+)
XLOC_025630 BX537310.1 non-coding upstream 625537 41500409 ~ 41500525 (+)
XLOC_025629 NA non-coding upstream 1059648 41043023 ~ 41066414 (+)
XLOC_025628 NA non-coding upstream 1177063 40945040 ~ 40948999 (+)
XLOC_025627 NA non-coding upstream 1223905 40898624 ~ 40902157 (+)
XLOC_025648 NA non-coding downstream 972945 43102010 ~ 43135493 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_02866255_02867695 MRM2, FTSJ2 misc CI01000046 null 2866070 ~ 2867794 (-)