XLOC_025637 (snx8a)


Basic Information

Item Value
gene id XLOC_025637
gene name snx8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42090418 ~ 42120172 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050485
TTCCACATCATTACAACTTTAAGGAGTACATTCCTGCTCTTTTCTGCAGGAAATCACATGGACGTGCCATCGCGCTCACATGACAGCTAAACGATGGCAGGGGACATAAATGAAGGATCGGTCCCTTCATACTATCGTGAAGTACATCAAGCCCTCTGCTCCGCAAGTGATGAACGAGTGCCGGTAAATGTATTTCAGAGAGTTTTCACCAGAACATCTCTCCCCATCACTGTTCAAAACCAGATTCTCGAACATGTAAACAGCAGTGATGGATTCCTAAGTAAAGTATCGCTATATAAAGCTCTGGCTCTCATTGCCCTTGCCCAACAAGGAAAACCACCAAGTCCCAAACTGCTGGAGAACTTCATACAAGATTTCCCAAAGCCTCAGCTGGGTGAGCCGAAGGAACTTCATAGTCTGAAGATGCAGACGGTGCAGGACAGTCCTCTCATCTTGTCTTTGACCCTGGCAGAGCTGTTGAAGAAGGACACCATCAAAATTGAGCTCACTCCAGAGAAGAAGGGTCTGTTTCTTAAACATGTGGAGTATCAGGTCACTAGTGAGCGTTTTACATTAACAGTTTATCGACGATACAGCGATTTCGATGTCTTCCACGAGCTTCTGCTTCAGAGATACTCTTACAGAGTGGTGCCGGCTCTGCCTCCAAAAAGGGCGCTGAAAGGAGTCCTGACCTCCGTGTCGGAGCGAGAGTTCATTGAAGGCCGGAGACGAGCTCTGACCAGGTTTCTGAATCTTGTGGCGCGGCACCCTGTGTTTTCTGAAGATGAGCTTGTGAAAACATTCCTCACCTTCAGTGGCTCGGATGTTCAATCTAAACTCAGAGATGCTTGCAGAAAACTGGGTGATGAGTTCATGACATGTAAATTTGCAACGCAGGCCAaggaTTATCTCCCAGCTGATATCCAGAGTCAGTTTTCCTCCAGCAGGCAGCTGATCAGAAATATCCATAGCAGTTTTCAGAAGTTACGGGACAGGGCAGAGAAAATGGCCGAGCGTTCGAAGGACAATGCCACAGATCTGCTGATGTTTGGGAAAGAGCTGAGCTTTTTGGGGTCAGATGAGTCCCCTGTGCCCATCCTGGTGTCTGGCAGGAACCCCTGGTCTGCTCTCAGACACTCAGTCAAAGGCCTCTCTGTTGACTTTTCTGCACTGTCTGAAAAAGCTGCCCGACAGGGCAGAAGAGAGGAGGATGAGGTGGTGGAAAAACTGGATATGTTCCTGGACTTGCTGCAGTCGTACAGGGACTTGTGTGAACGGCATGAGAAAGGGGTTTTGCACGATCACCAGCGAGCGCTGCAGAAATATGGCATCATGAAGAGGCAAATTATGAGTGCCACCGTACAGCCTAAAGAACAGCTCTCTGTTGAACAGCTGGAGTCCCGCATCGTCCAGCAAGAAAACGCTATTCAGGCCATGGAGTTACGCAACTACTTCTCCCTGTTCTGCCTGCACCAGGAGAGCCAGCTGATCTTCACATACCTGCCCATTACATCACACATCCTCGCATCATTTGTGGACTCACAAGTGCAGGGACACAAAGAGATGGGTGAGGTGTGGCAAGATCTGCATTCCAAGCTGAAAAGTCTTTTTGGGGATGGTAATGGACGCTCTCCGCCTCTCAGCCCAAAATAAACTCTGCCTTCAGAATTGAAAGAAGACAAAGAACTCTGGCCTGTTTTCAATAGAGAACTAGTacagttaaaattaattaaaagcacTGCCATTCTTGAAAAGAAAATTGGGATAAGAATTATGGAGAAAACCTGACAGAGGTTGAACTTAGCAAACTGAcatctaaaataaatacaaaggtGGCCAAAATTATTAGAACTCCTGACAGAATCTGAAAATGAAGACCTTTTTTTTGTCTCCAAAACCTGATTTCATTTCATAATGTTGACGAAATGTGCAGGTGGTTGTTCTGAGGACAACAGATATCAGATGAAGTATCATTTTTATCCACTTTTAActgtaatatgtaaatatgttttgcAGCAATTATAGCGGCACATCTCCTGGCATAGTTTCAGTATATTCAACACTAATGCTGTCCAATGCCTTATGCAAATCAAGTTCGACACTTTCCTTTGAATGTACAATAGATCTGTCCTGTTTATCCTCCTATGGCAAAATTTGCTTAATTGGGTTGAGGTCCAGACTTGAGGTGGGCCAGTTCATCATTTTCAATGCTTCAGCAGaatgtttttcagtcattttataGGTATTGTAGTGATcggtttaacagttttttttccaccattgaagctattattattaattttagaaaGACACTGTATTAATGTTTTTAGTCTACATGTGTGCAAAGCTGATGAGATGTGGTTTTGAAGCTTAATCTAAATAGGAGGAAACAAACGTTTATCACTTCTCTATCTTAGATGCAAAATAAAGTGAGCTGACAGGCTAATAGTTAGTCTAATAGTGTTTTGTAGTGTTCTGTTTAGTATACATGAAAAATATAGAAAATGCCTATAGATTGTGTTATTGGTTGTAAATGCACTGTATTAGTTTTTAGGTTGGGGATTTAACTGATGTCAAGATGTTTCTACAAGTCTGatatatgttgtgtgtttgatTTGCAGCTTTGTTTTGGTTTCACATTTCACTTTCATCCTAATGTGTCAAAGAAATCCATACTTTCTTTCATTTACGTTTCAACACGGATGAAAAAAGTGACGGTAATTTGTAACAAAAATGTGCATTTCAAACATTTT
>TCONS_00050486
CAGGAAATCACATGGACGTGCCATCGCGCTCACATGACAGCTAAACGATGGCAGGGGACATAAATGAAGGATCGGTCCCTTCATACTATCGTGAAGTACATCAAGCCCTCTGCTCCGCAAGTGATGAACGAGTGCCGGTAAATGTATTTCAGAGAGTTTTCACCAGAACATCTCTCCCCATCACTGTTCAAAACCAGATTCTCGAACATGTAAACAGCAGTGATGGATTCCTAAGTAAAGTATCGCTATATAAAGCTCTGGCTCTCATTGCCCTTGCCCAACAAGGAAAACCACCAAGTCCCAAACTGCTGGAGAACTTCATACAAGATTTCCCAAAGCCTCAGCTGGGTGAGCCGAAGGAACTTCATAGTCTGAAGATGCAGACGGTGCAGGACAGTCCTCTCATCTTGTCTTTGACCCTGGCAGAGCTGTTGAAGAAGGACACCATCAAAATTGAGCTCACTCCAGAGAAGAAGGGTCTGTTTCTTAAACATGTGGAGTATCAGGTCACTAGTGAGCGTTTTACATTAACAGTTTATCGACGATACAGCGATTTCGATGTCTTCCACGAGCTTCTGCTTCAGAGATACTCTTACAGAGTGGTGCCGGCTCTGCCTCCAAAAAGGGCGCTGAAAGGAGTCCTGACCTCCGTGTCGGAGCGAGAGTTCATTGAAGGCCGGAGACGAGCTCTGACCAGGTTTCTGAATCTTGTGGCGCGGCACCCTGTGTTTTCTGAAGATGAGCTTGTGAAAACATTCCTCACCTTCAGTGGCTCGGATGTTCAATCTAAACTCAGAGATGCTTGCAGAAAACTGGGTGATGAGTTCATGACATGTAAATTTGCAACGCAGGCCAaggaTTATCTCCCAGCTGATATCCAGAGTCAGTTTTCCTCCAGCAGGCAGCTGATCAGAAATATCCATAGCAGTTTTCAGAAGTTACGGGACAGGGCAGAGAAAATGGCCGAGCGTTCGAAGGACAATGCCACAGATCTGCTGATGTTTGGGAAAGAGCTGAGCTTTTTGGGGTCAGATGAGTCCCCTGTGCCCATCCTGGTGTCTGGCAGGAACCCCTGGTCTGCTCTCAGACACTCAGTCAAAGGCCTCTCTGTTGACTTTTCTGCACTGTCTGAAAAAGCTGCCCGACAGGGCAGAAGAGAGGAGGATGAGGTGGTGGAAAAACTGGATATGTTCCTGGACTTGCTGCAGTCGTACAGGGACTTGTGTGAACGGCATGAGAAAGGGGTTTTGCACGATCACCAGCGAGCGCTGCAGAAATATGGCATCATGAAGAGGCAAATTATGAGTGCCACCGTACAGCCTAAAGAACAGCTCTCTGTTGAACAGCTGGAGTCCCGCATCGTCCAGCAAGAAAACGCTATTCAGGCCATGGAGTTACGCAACTACTTCTCCCTGTTCTGCCTGCACCAGGAGAGCCAGCTGATCTTCACATACCTGCCCATTACATCACACATCCTCGCATCATTTGTGGACTCACAAGTGCAGGGACACAAAGAGATCTGCATTCCAAGCTGAAAAGTCTTTTTGGGGATGGTAATGGACGCTCTCCGCCTCTCAGCCCAAAATAAACTCTGCCTTCAGAATTGAAAGAAGACAAAGAACTCTGGCCTGTTTTCAATAGAGAACTAGTacagttaaaattaattaaaagcacTGCCATTCTTGAAAAGAAAATTGGGATAAGAATTATGGAGAAAACCTGACAGAGGTTGAACTTAGCAAACTGAcatctaaaataaatacaaaggtGGCCAAAATTATTAGAACTCCTGACAGAATCTGAAAATGAAGACCTTTTTTTTGTCTCCAAAACCTGATTTCATTTCATAATGTTGACGAAATGTGCAGGTGGTTGTTCTGAGGACAACAGATATCAGATGAAGTATCATTTTTATCCACTTTTAActgtaatatgtaaatatgttttgcAGCAATTATAGCGGCACATCTCCTGGCATAGTTTCAGTATATTCAACACTAATGCTGTCCAATGCCTTATGCAAATCAAGTTCGACACTTTCCTTTGAATGTACAATAGATCTGTCCTGTTTATCCTCCTATGGCAAAATTTGCTTAATTGGGTTGAGGTCCAGACTTGAGGTGGGCCAGTTCATCATTTTCAATGCTTCAGCAGaatgtttttcagtcattttataGGTATTGTAGTGATcggtttaacagttttttttccaccattgaagctattattattaattttagaaaGACACTGTATTAATGTTTTTAGTCTACATGTGTGCAAAGCTGATGAGATGTGGTTTTGAAGCTTAATCTAAATAGGAGGAAACAAACGTTTATCACTTCTCTATCTTAGATGCAAAATAAAGTGAGCTGACAGGCTAA

Function

symbol description
snx8a Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport and retrograde transport, endosome to Golgi. Predicted to be located in membrane. Is expressed in several structures, including EVL; periderm; tail bud; vasculature; and ventral mesoderm. Orthologous to human SNX8 (sorting nexin 8).

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031202-1 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport and retrograde transport, endosome to Golgi. Predicted to be located in membrane. Is expressed in several structures, including EVL; periderm; tail bud; vasculature; and ventral mesoderm. Orthologous to human SNX8 (sorting nexin 8).

Ensembl:

ensembl_id ENSDARG00000074842

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050485 False 2753 mRNA 0.43 13 42090418 42120172
TCONS_00050486 True 2381 mRNA 0.44 13 42090464 42119865

Neighbor

gene id symbol gene type direction distance location
XLOC_025636 NA coding upstream 127672 41954893 ~ 41962746 (+)
XLOC_025635 lfng coding upstream 163549 41917499 ~ 41926869 (+)
XLOC_025634 chst12a coding upstream 357471 41726360 ~ 41732947 (+)
XLOC_025633 eif3ba coding upstream 365486 41714966 ~ 41724932 (+)
XLOC_025632 gna12a coding upstream 384180 41647637 ~ 41706238 (+)
XLOC_025638 mrm2 coding downstream 5890 42126062 ~ 42129065 (+)
XLOC_025639 NA coding downstream 74038 42194210 ~ 42206974 (+)
XLOC_025640 NA coding downstream 370287 42490459 ~ 42497766 (+)
XLOC_025641 BX537305.1 coding downstream 377642 42497814 ~ 42504515 (+)
XLOC_025642 NA coding downstream 387310 42507482 ~ 42509830 (+)
XLOC_025429 BX649540.1 misc upstream 11841382 30248739 ~ 30249036 (+)
XLOC_025630 BX537310.1 non-coding upstream 589893 41500409 ~ 41500525 (+)
XLOC_025629 NA non-coding upstream 1024004 41043023 ~ 41066414 (+)
XLOC_025628 NA non-coding upstream 1141419 40945040 ~ 40948999 (+)
XLOC_025627 NA non-coding upstream 1188261 40898624 ~ 40902157 (+)
XLOC_025643 NA non-coding downstream 634485 42754657 ~ 42755168 (+)
XLOC_025648 NA non-coding downstream 981838 43102010 ~ 43135493 (+)

Expression


Co-expression Network