XLOC_025632 (gna12a)


Basic Information

Item Value
gene id XLOC_025632
gene name gna12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 41647637 ~ 41706238 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050479
CAGAAAGTCGCTCGCGCTCCTCCAGAATGAACTTTTGGGACTACCAGTATGTAAAGGAATGCGTTTTTCAGCGAATTAACATTTCCTGACCATATTTATCGCTTGATTTTTATTGTACTGTCACGAACAGTGGCTTTGTTTGtataatttctttaaagtttTTTAGCGGACAGCAGTGGTGGTCGCTTTGCTGTGGAAAGGATCTCTATTCAGCTTTCCTCAACAAATGCCTTTATAATAATGGAGGAAAGTGTCCGCTGTGATTCGGTTTTACTCATTTAGTGTCTCTTTAAATTGTTAACACTTGTAGACAGATGAGCTGAGTAGATTTTATCCGAAAGATAAAGTTCTTTGGCACTTTAATGAGTAGATCAGGTGATAACTGACCGTGTTAAAGCTGGACAGGATGGCTGGCGTGGTGCGCACCCTGAGCCGGTGTTTACTGCCCGCTGAGGCCGCTCACGATGACAGGAGTACCGGGAAAGATCGCACCCGCGAGCGGGACGTGAACCGGGAGCGCGAGGCGAAGCGGCGCAGTCGCGAGATCGACTCGATGCTGAAGCGCGAGCGGCGCTCCATACGACGGCTGGTGAAGATCCTGCTGCTGGGCGCCGGAGAGAGCGGCAAGTCCACATTCCTCAAGCAGATGAGGATCATCCACGGAAAAGAGTTTGACCAGAAAGCGCTGCTCGACTTTAGGGATACCATCTTTGAGAATGTCATCAAGGGCATGCGGGTACTGGTGGATGCCCGAGACAAACTTGGCATTTCCTGGCAGAACTCTGAAAACGAAAAGCATGGCATGTTTGTTATGTCCTTCGAAAACAAAGCAGGCATGGCTGTGGAACCCTGCACCTTTCAGCTGTACGTCCCAGCCCTGCAGGCACTCTGGAATGATAGCGGCATCCAGGAAGCCTACGGTCGACGGAGTGAGTttcagctgagtgaATCAGTGAAATATTTCCTGGACAACTTGGATCGGATTGGCCAACTGAGTTATGTGCCGAGTCGACAGGACATCTTACTGGCCCGGAAGGCCACCAAAGGAATTGTGGAGCATGATTTTGTCATTAAGAAGATCCCTTTTAAGATGGTAGATGTGGGAGGCCAGCGCTCTCAAAGGCAGAAATGGTTTCAGTGCTTTGACGGCATCACCTCCATCCTCTTCATGGTGTCCTCCAGCGAATATGACCAGGTGCTGATGGAGGACCGTCGCACCAACCGCCTGGTGGAGTCCATGAACATCTTTGAGACCATAGTCAACAACAAGCTCTTTTCCAACGTTTCCATAATCCTCTTCCTCAACAAGATGGACCTTCTGGTGGAAAAGGTACGCAAGGTCAGCATTTGCAAGCACTTTTCCGACTTTCGGGGAGACCCTCACCGACTGGTGGACGTGCAGGCCTATCTGGTGCAGTGCTTCAACCGCAAACGTCGCAACCGCATCAAGCCACTTTTCCACCACTTCACCACTGCCATTGACACTGAGAACATTCGCTTCGTCTTCCATGCCGTCAAAGACACCATTCTTCAGGAGAACCTTAAGGACATAATGTTGCAGTGACTTTTTGATTGGTTTCTACCATTGTTTGAGTTCATTTTCAGTCATATTTCGGGAGGAAATTACTTTTGGAAAAAACATTTTGATCACTGTGCGTGAGAAAGTCATAGTGCGAGATTATACTCCAGTCAGTTATATCCAAGAGATGGCATTCATATCCAAGAAAATGACACAAATCTTTCTTCGCCATCACTCATTTGCAATTTTTCCTGTGTAACAGGATGTTTGAAGACACCATTGATGGTGGAACTTTTAAGGGTATTAAAATTCGGTTAATCCGTCAATTAAGCATATTTTCACCACTTGTCTCAAGGATAAACTCGAACTTTACACTGGCTCATTTCCCAAATAACATACTACAAACAACTAGCAAACCTGCACTGAACATCCAGCTTGAACAAACATTACTTTCATGTCACTCGACAGATTTATTGTTGATATATTCTaacatttaaatcacattttgctTTATCTATAAATTATAGATGACATGCAAATTTCTCATTAACAACTAAGCAGGGTTTTTGTACATAGAATGAACAGCGGCTTTTGTATGTGTCTCCTCTGCTTTTCATGTGTCTCTTCACGTTAAGCTACAAGCTTTGAAATATAGAGTAGGGTCAAATCACTGGTTATGCCTAACACCACTAACTTACGATGAACAGCGCATTAATGGTATTCTTTAAATGTCATGATTGCGCTGAATATATACTATATGAGTAATCATATATTGTTAAGCCAATGTTTATACAATCTGTGTACTTTACAAGAGGGAGTCAATCTGATGCTGTTCAGTTGGTCTATCAACAGATGTAAAGGTTTgatttcttccttccttctttgcACACTGAATTCTGAAATTTTTCTATGCGTTAGTTTTTCATATTCATATGCGAAATATTCGTCACATATACAAACCTTGCACATTGAGTATGATACGTATTAAATAATCCATtatgaaaaaacacaaaacatttgcaAGTCAATTAAAGCAGTGATACTTTGTTCTCctctcttctccaaagtagaaaaaaaaaggagaatAGGCCACATATTGCGTTCATCCAATTCTGCATCAAGAGTAAGGAGAGTTTAGCTCATTGTCAAAGAGCTGCGCTGGATTATCCcggaattaatttatttatctcaaactttatttcaggaaatcagtggaattttgatacattgcttgcgatacttcacacattcacattggtaaacaaatcctgaacagagactggcagtactATGGACATTATAACAGATGGCAGCCGCGTTGATGTGTCAAAGCAACGGACCGAAAGCACACCATGCTTTCTATTATAATTTTTATGAGCAGTACGTCAAatgtatgaacacacacacacaccaaacagcagCAGGGCAGAGGTGTGCCAGTTACTGAATCCAGGATTCTCAACAGTCCGctacattctgtctttattttatgcactgtgtttgtcataaagttatctgtagctcaaatgtcggcattctgtatttagcttttcgcttgtacgATGGCTTTGAAcggtcaaaacacctctcaaaatgcTTTTTCAAATgagaaaagcagaaaaaaaatcaaacccgATTCAAATTTTTTTATAGCGGACGAAAGTTTCGGAGGCTGTGTGTTAATGCGATTGATTCAACGTGAggtcgaatttattttttaacatgcaaaaattatggattcagtgtgcaataacctttatTCTTCAGATCTTGATGAATGGCAGCTGTGAACagctgtttgttttgcttttagatTTTGTTGCTGTGGGAGGTCCTATGTTgtgatcccggacgagcccccaatttgtTGCGCCCATGTTACAGTCTTTACATGAACAGGGTGAGAAGTGGCTTCCCTTTGATGCCTGCCAGTGCTGAGGAGAGTTTCTTGAGGTTACTTTTCCACAGATCTGGTTTTGGGATCTGGCCTGGGCGAGTAGTTTCCGTTTCAATGCAGGTGTTACTTgttagacttttgttttgtgccATCGTTTTAGGCTTTGGGAAAGTGTGAGATATGTTATCAAATAGTTCTAACAAGAGCATCAAGCTCTTCTTGCATTTTTATGTGTGCCGCAATGGACACTGTGCCTCATTTTTTATTCCAAAACAACATTGACAATGTTTCTCTATGCCCTAAAGGTATTTAAATTTTATCCTTCCTCCTAATCACCGCAGTGCCATGTTGGCAGGAAGGCATTTGATCTGAGATATTGGACACACCCTAAACCTTTGTCCCTGACAACTCTTCCCATTGGGAGCAAAACATGTGCATTTACTGGAAGCTCTCCGGTGCATAAAGAAACAGACTAAATTCTTTAACTCAAGGCTGTGTTTattcttgtttctgtttttagGACCATAAATCTATTGGGAGAGTTTAACGGCAAAAAAGAAACAGACATAAGTATAAAGGTTATTCAAATTTACAATTAAGATAAGCATGTAATTATTTTGATATGAGTATTTTTTTTGGAGGATAGTAATCAGAGTAACTGTTTCCAGTCGTGGTTTTAGTCTACTGAAGGTGAtttaaaaactacagtatttatGTTACATTTGCTGCTCTGGTGTTTTTGTCCCTGTATGGATCTCATGAGTGCCACTGTTAACAGGATGTCTGCTTCAACACTCCTTTCAGAGTTTCACTGTACTTCTTTTCCACTTTCATATTTGTTTCCCAATGTTTAATGTATCCAGTGATTGACTGTAAAAAGTGTGAAATTTCAGATAAACTGCAATATGAGTGTTTTGTAAATaagaactgtaaaaatacaataaaaccatGAGTTATACTTAA

Function

symbol description
gna12a Predicted to enable D5 dopamine receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Acts upstream of or within several processes, including gastrulation; glial cell development; and negative regulation of cell-cell adhesion mediated by cadherin. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in brush border membrane. Is expressed in brain; gill; head; and olfactory epithelium. Orthologous to human GNA12 (G protein subunit alpha 12).

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0009826 unidimensional cell growth biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0060973 cell migration involved in heart development biological_process
GO:0014003 oligodendrocyte development biological_process
GO:2000048 negative regulation of cell-cell adhesion mediated by cadherin biological_process
GO:0043149 stress fiber assembly biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0048932 myelination of posterior lateral line nerve axons biological_process
GO:0007165 signal transduction biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0031526 brush border membrane cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function
GO:0031752 D5 dopamine receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050221-1 Predicted to enable D5 dopamine receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Acts upstream of or within several processes, including gastrulation; glial cell development; and negative regulation of cell-cell adhesion mediated by cadherin. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in brush border membrane. Is expressed in brain; gill; head; and olfactory epithelium. Orthologous to human GNA12 (G protein subunit alpha 12).

Ensembl:

ensembl_id ENSDARG00000025826

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050479 True 4379 mRNA 0.41 4 41647637 41706238

Neighbor

gene id symbol gene type direction distance location
XLOC_025631 card11 coding upstream 15578 41558682 ~ 41632059 (+)
XLOC_025630 BX537310.1 coding upstream 147112 41500409 ~ 41500525 (+)
XLOC_025629 NA coding upstream 581223 41043023 ~ 41066414 (+)
XLOC_025628 NA coding upstream 698638 40945040 ~ 40948999 (+)
XLOC_025627 NA coding upstream 745480 40898624 ~ 40902157 (+)
XLOC_025633 eif3ba coding downstream 8728 41714966 ~ 41724932 (+)
XLOC_025634 chst12a coding downstream 20122 41726360 ~ 41732947 (+)
XLOC_025635 lfng coding downstream 211261 41917499 ~ 41926869 (+)
XLOC_025636 NA coding downstream 248655 41954893 ~ 41962746 (+)
XLOC_025637 snx8a coding downstream 384180 42090418 ~ 42120172 (+)
XLOC_025429 BX649540.1 misc upstream 11398601 30248739 ~ 30249036 (+)
XLOC_025623 BX649559.1 non-coding upstream 852758 40791720 ~ 40794879 (+)
XLOC_025639 NA non-coding downstream 487972 42194210 ~ 42206974 (+)
XLOC_025640 NA non-coding downstream 784221 42490459 ~ 42497766 (+)
XLOC_025642 NA non-coding downstream 801244 42507482 ~ 42509830 (+)
XLOC_025643 NA non-coding downstream 1048419 42754657 ~ 42755168 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_03095399_03129278 GNA12, GNA12A coding CI01000046 null 3094953 ~ 3129652 (-)