XLOC_025640


Basic Information

Item Value
gene id XLOC_025640
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42490459 ~ 42497766 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052755
TGAAAACGGGTGTGGTCCTCTCCATAAATGGAGAAAATCTTAATTCTGCAGGTTGATTGGCTCTGCCTTGCCTTCTATTGGCCAACGATGATGAGCCGTCTTTAGGTTCCAGAACTTTCTGCGGTGAGTAGGTTGTTTAAGAGGTTTGCTCGTATAATTGCTGTTTAACGTTCAATTAAAACATGTATATTACAAAGTGTAGATTGTTGTTGCTTGTAGTGGATGTAAAAGTACCCATTCACGCCCTTTAGTGGGATTTCAGGTGTCCATAATAATTCAGGCTGAAGCCGTTGTACTAACGGTTAGATCTTAACTTCATGCAGGCTGCTTTATGACGTACAGTCACtttatactgtaataaatttTAAACTGAAGTCGCGATTAGAACAGGTACGATTCAAGTCGCAAAAGCTGCGATTTTTTCGATAAATAACGTTACTGTGGTGAGGGCGGCCCATTAAAACATCCTACTAACTATCGTCAACGTACTTAATCAGCAGTCGACCGTTACAACAGAACCCACGAGCCCGTATCTCACTGATATGGAGATGAAATGGAAGCTGTGAGCtaaaggtctgcattcccgcggctgtactGAAGCTGAGAGCGAgacggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagacatTTGACCTGCTTGCTTAAGGTAACGTGTCCTCTCGGCTATTACAGCGAGTCTTGTGGTCAGACACACATAAGCATGTTACCCTGCAGCTGGAGTTTTCTTTACCGCGTTTATCATGAATCAGCTGTGATATCCGCGCATTTAAGACTTTAACCGTGGCCGTTTGTCCGTATCACCGTCACTCCGATGAAAAACTCGAGCCGCAGTAACCGCTGTCGAGAAGAaccgcagccctttctgttgagtgtgGGAACACAATGACCGATTATAGGTGTTTAAGAACTTGTTCGACAGCGCTAAAAAAGCAATCGAGATTATATTTACATCATTAGTTTATTTGTTGTAAATGCTCTTGTCCTGTGCACTTAGTTTAGCTTTGTTTGAAACATTCAAGAACAGTGTTTTCTTTCAGCAGGTAAAATAAACGAACAAAtgatatgtaaatgtataaattatacattttattgcaAGAATTTTTGTGCTGTgaattaaaatctaaaattgtgtatggaaagcattgtcagtgCACTGTGAATGTCGtgaaatcaatataaaaaaatgttacacaatcTAAATGTAAAGGTTTTTATACATGTTTACTTAATATTGCATATAGAATTTATGTAATTGACATTAAAATACAATAGTCATTTCCCTAGAACAAATGTGCTTTTTATGCGACATGATTGTTTctacttttatctttttagaaCTTTTTCACCAGCTATCCATCCTGTGTCAGGTAATGATTTAATATATTGACAGGGTAAAAAGAAACATGCTGTACTTACAAAAATTCtcgatttttttcagcagttaaACTCACTTTTTGGATTGTAATCAGTTTTTAAGATAACATTAATTTCATACATTTATCAGACCACTACTGTAATATGACTAAGGGGGGAAATTAAGTGACCATTCTGTTTCTCCAGATTTGTTAGTTATGGGCTTgagttaaagggatggttcactcaaaactgaaagttctgtcatttactcaccctttgtgTTTCATACATTCTTCTGTTGAGCAAAAAATATACTTtcaagaaagctggaaacctgtaaccatttacttccatagtattttcctATGTACTATGGAAGTCTAGTGTTGCTccgatttttgcttttttttccctcCAAAATATCTTTagtattcaacagaataaagttagtcataaaggtttgtaaccacttcaGTGTAAGTAAATGCATAAAAGTGAGTCAATTGTTTATTTTGGGGGAATTGTCCcttaaaaaattattcttttaCATTGTTTGGTTACtacttttcaaataaatattttgtttttttttttaaaggaaagtaCAGTTGgtctaacactttttttttttttttttttttggtgtgtctGAAAAGTGTTATTCCATAGaatattgatttcttaaaaaaaaacacatttgtattgTGTAAAATCCAGTACAAACAtgtcttgaaataaaaaaaaaaacaagaattggtTCACTGAAATGCATAACTACAGGTCTAAATTGTAAACCCAGAGAAACAGTTAAGGGATCTGTTTTTCCACGTGCGAAATAATGGTCTGTTTTTCCCCCTACATCACTTTTCTGAGCATCTTTTGCAAATGACTCTGATAGTATGTTTGTCACAAATTGGCTCCTTTAAAAAATAGATACATTCTTTTAATATATccataacaatttattttatttacagattAACTATGTTATTGATAAGTGATGTTTACATGGAGAGAAGGTAATGCATAGTTGACTAATTTTCATTAAAGTAATTTTTTGTCCCTTTTACAGAGAGACTCGCCAAATATTCCAGATTCTTCACTGCACTTTGCATCTTGGTGAGTGTTggataacatttttatttcaaaaattgCATAGTTGACTAATTTTCATTAAAGTAATTTTTTGTCCCTTTTACAGAGAGACTCGCcagatattccagattcttcaCTGCACTTTGCATCTTGGTGAGTGTTggataacatttttatttcaaaaattgAGAAAACAGTAGTTGTTGCTTTGACCTAATTTGTtctattttcttcatttttcagGTTTCctgtgaaaaataaaacaactacttctgttgttttatttttcagtgttCTCCATTTTTACAGGGATAACgtttcttttgttttaataaacttagcattttgtaatttatatattctttttttgttttgtttttttt
>TCONS_00052366
ATTCTGCAGGTTGATTGGCTCTGCCTTGCCTTCTATTGGCCAACGATGATGAGCCGTCTTTAGGTTCCAGAACTTTCTGCGaaCTTTTTCACCAGCTATCCATCCTGTGTCAGAGAGACTCGCCAAATATTCCAGATTCTTCACTGCACTTTGCATCTTGAGAGACTCGCcagatattccagattcttcaCTGCACTTTGCATCTTGGTTTCctgtgaaaaataaaacaactacttctgttgttttatttttcagtgttCTCCATTTTTACAGGGATAACgtttcttttgttttaataaacttagcattttgtaatttatatattctttttttgttttgttttttttctgcattttttatataatttttttttgttccttaaaaaaaaaaaaaaaaactttcaatattACACACTGTACTGTCTTCTATAGTTGCTAACCTCTGTTTTCTTTCAGATACTACAGGTTTCATCTTCTCAGGTTCTGCAGTGCTTTGCATCAGGGGAAGTTTTAAAAGAGACTCGTcagatattccagattcttcaGATACTACTGGTTTTCATCTTGTCAGGTTCTGCAGTGCTTTCATCGGGGGAAGTTTTAAAcatgcCACGAAAAGGGAAGAGATCTCAGGCTCAGAAATTGCGCTGGAAAAAGATAGACCTTCAAGATGTAAATACCAGCCTTTCCTGCATTAAAGAGGTTGAACAAACGAGTACCAGTGCTGCTGTAGGCCAGTCTCCTGTTAGACAATATGAGGAAAGTGGGGGTAATGAACCCAAAGTTGTGTCAGTCCGGGCGTCTCATTCTCAGGCTGATGTTCGATATGATGAATTCTCAAGGAATCACCAGTGTACCTGTG

Function

GO:

id name namespace
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052755 False 2913 lncRNA 0.34 1 42490459 42493371
TCONS_00052366 True 861 lncRNA 0.39 8 42490501 42497766

Neighbor

gene id symbol gene type direction distance location
XLOC_025639 NA coding upstream 283485 42194210 ~ 42206974 (+)
XLOC_025638 mrm2 coding upstream 361394 42126062 ~ 42129065 (+)
XLOC_025637 snx8a coding upstream 370287 42090418 ~ 42120172 (+)
XLOC_025636 NA coding upstream 527713 41954893 ~ 41962746 (+)
XLOC_025635 lfng coding upstream 563590 41917499 ~ 41926869 (+)
XLOC_025641 BX537305.1 coding downstream 48 42497814 ~ 42504515 (+)
XLOC_025642 NA coding downstream 9716 42507482 ~ 42509830 (+)
XLOC_025643 NA coding downstream 256891 42754657 ~ 42755168 (+)
XLOC_025644 psmg3 coding downstream 421080 42918846 ~ 42920062 (+)
XLOC_025645 tmem184a coding downstream 425509 42923275 ~ 42957609 (+)
XLOC_025429 BX649540.1 misc upstream 12241423 30248739 ~ 30249036 (+)
XLOC_025630 BX537310.1 non-coding upstream 989934 41500409 ~ 41500525 (+)
XLOC_025629 NA non-coding upstream 1424045 41043023 ~ 41066414 (+)
XLOC_025628 NA non-coding upstream 1541460 40945040 ~ 40948999 (+)
XLOC_025648 NA non-coding downstream 604244 43102010 ~ 43135493 (+)
XLOC_025649 NA non-coding downstream 702551 43200317 ~ 43328759 (+)
XLOC_025652 CU138533.2 non-coding downstream 1152275 43650041 ~ 43653791 (+)

Expression


Co-expression Network