XLOC_025644 (psmg3)


Basic Information

Item Value
gene id XLOC_025644
gene name psmg3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42918846 ~ 42920062 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050491
GACCgttcctctctgtctctctcctcctctcgtTCAACATCTTTCCCCTTTGTCATTGCGTATGCGTAGAAGAAGATCCCCCACGTTTCAGTGTTCGCCGAGGGATGTTCATAAACTGAATTCCATCGACTTAACAGGATAGTTTACTAGCCCCCGTCAATAAGTTACAGGTGAAATTAAATAATGGCCCCTCAACCAGTCATCCGATCAAAACAGGCAGAAAAAACAATAAACGGAAACCAAACTCAAGTTGTTTGCACGGAATTCAGCAACTACATATTTATCGTTCTGACACAGTATGGTAAAATTGGAACGCTCGTGTCTATAACGCCTGACACGAGGTCCGGTGACATCAGTGTACCAATGTACACTAGCAAAGTCCTGCTGGGGAAAGATGAGCCTCTTACACACGTCTACGCCAAGAATGTTGCAACGTTTGTCTCACAGGAATCAGGCAACCGACCAATCCTGTTGGGCCTTTCACTGAAAGACAACAGTGCTGAAACTATGAAAACTGTTAAAGATATGATCAAAAGCTGCCAGGTTTGGTAAACAGAAGGTCACATGGCGAGCACACTATTTTTGTTTTGGAGTATCTTTGCGATTTATACATCATAAATCTTTACTTGTCTTCGGTGAGTTTACAGAATGCTTGAGCAGATGGTGATCTTAAGTGCTCATGCTATACTTGAACAGTACTCAGCACTTGATACTTAATATAAAAAGTGAGAGAATTGTTCAGTTTCACTTCTATTTTTCCAGATAATAATGGATGTCTTTAAGTTGTCACaagaataaatttatattttcttatC

Function

symbol description
psmg3 Predicted to be part of proteasome complex. Orthologous to human PSMG3 (proteasome assembly chaperone 3).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0000502 proteasome complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-040718-262 Predicted to be part of proteasome complex. Orthologous to human PSMG3 (proteasome assembly chaperone 3).

Ensembl:

ensembl_id ENSDARG00000098391

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050491 True 815 mRNA 0.41 3 42918846 42920062

Neighbor

gene id symbol gene type direction distance location
XLOC_025643 NA coding upstream 163678 42754657 ~ 42755168 (+)
XLOC_025642 NA coding upstream 409016 42507482 ~ 42509830 (+)
XLOC_025641 BX537305.1 coding upstream 414331 42497814 ~ 42504515 (+)
XLOC_025640 NA coding upstream 421080 42490459 ~ 42497766 (+)
XLOC_025639 NA coding upstream 711872 42194210 ~ 42206974 (+)
XLOC_025645 tmem184a coding downstream 3213 42923275 ~ 42957609 (+)
XLOC_025646 ints1 coding downstream 79215 42999277 ~ 43060971 (+)
XLOC_025647 si:dkey-43p13.5 coding downstream 166486 43086548 ~ 43092262 (+)
XLOC_025648 NA coding downstream 181948 43102010 ~ 43135493 (+)
XLOC_025649 NA coding downstream 280255 43200317 ~ 43328759 (+)
XLOC_025429 BX649540.1 misc upstream 12669810 30248739 ~ 30249036 (+)
XLOC_025636 NA non-coding upstream 956100 41954893 ~ 41962746 (+)
XLOC_025652 CU138533.2 non-coding downstream 729979 43650041 ~ 43653791 (+)
XLOC_025653 NA non-coding downstream 765602 43685664 ~ 43687657 (+)
XLOC_025654 NA non-coding downstream 791005 43711067 ~ 43755843 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_02480126_02480593 PSMG3 coding CI01000046 null 2479876 ~ 2481941 (-)
tiger barb (Puntius tetrazona) G184674 NA non-coding NW_025048156.1 JAEQBD010000501.1 678993 ~ 685667 (-)