XLOC_025642


Basic Information

Item Value
gene id XLOC_025642
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42507482 ~ 42509830 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052756
ctgggtcagttggtgtttctatttggagtttgcatgttctccctgcgttcgagtgggtttcctccggttgcttcgACTTCTTCAACAGTCTAAAGACacgcggaacaggtgaattggtatagattaaattggccttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtaaatatgtatgttcagatatttcccagagacgggttgcggctggaagggcatccgctgcataaaaacgtgctggataagttggcggttcattctgcagtcgtagccccagattaataaagccgaaaaaatgaatgaatgtatgatttacattttctgttatattattaatttgttacagGCACAGCTTTAACACAACAGCAGCCTTTTCAAAGTGGACAGAATTCTTTGAGATTCAATCTAAAGCTAAgtattttgtttcagttgtttgTACTGCCTTGTAATACAGTCACATTTTCAGCATAATGTTAAATCTTAGTCTCATTCaagtgttgtgtttttttatgtttttactacCAGAAGACCCAAGAAGATGTGTTGACTGAGAAAACAAATGTCCTGCAGTATTGTTGAGGAAGACATCTGCCTAACTATATATTGGTGAGCATGCTGTTAGGATCACGCCATTtaattgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactaataTGTATTGAAATTATAAAACAAACCAGTTGTCATGTTACAAAagattctattttaaatattgtttaagcttcctacaaaaagaaatgtaaaaaatatatatttccacaAGTTAAGCTGCATAAACTAAGAGGCATTATTAAGGAGGTTATTCacctaaacatttaaattatcatttacTGGAGTTGCTTGCTTCTTGAACTCaatacttgaaaaataaaataaataaaaagcatttaaaatcttaaaagttATGGAAAAAAAGCTATTGACTTTCTATGTATTTTCTTTGCATCACTATTATTGTTAATGGCTGTTTTAACTAGTGCTTGTATATAGCGTTCTTATTATTGATTCATCAATCTCATGGTTGTAGGAGAAGACCAGGTGTATGCGCACTACGGCATTGCAGAATGATAGACCAGAGGAAGAACATCTCTAATACAGAGGTATTCTGAAACAAGTGAGTTATGCCGTTACAAAAAATTCTATTTGCAATATTGTTTAAGCTTTCTCTAAAAGGaaacttttacaaaatatttccaCAAATTAAGCTGCATAAACTTAGAGGCATTATTAAGGTGTTTATTCACCTAAACTTTTAAGTTGTCATTTACAGATATTCTACTCGTTTCAAATATGTCTGAGTTGCTTGCTTCTTGAACTCGAAATGCTTGagaatgcaaaaaaaatctttaatgttgtggaaaaacagcattgactttctttgtattttttgcaTCCACTATGAATGTTAATGGCTGTTTTAATGGTGCTTGTGTATAtagtgttcttattattgattttttttaatctcatgGTTACAGGAGAAGACCAGGTGTTTGGCATTGCACACCACAGCATTGCAGGATGACGGACCAGAGGTATACTTTATTAGTACTCCTAGAAGAGTCTTGTGGTTCAGTGCATCTTGTCATAACTTGTGCTTTGTCTTTAAGAAGTCTTTAGGAAGTATGGACTTTGTAAAACCTTAGATTTTAAAGTAAACTGTGATTCTCATTTTCTCTTTGTTCCTGAAGTATCCaaacaatcaaaatatattttttttactaataattttgtcacatCTGTTTTGCCTCCTCTTCCTCAGGATATAAAGTCTGTGCATGCCAGATCCAGAGGCCAGATGGTGGAAGACGGTTTCCTGCAACATTTAGATAATTTTAacgttgtttaaaaatgttattagcttatacatttaaaaaatgttgttacGTGCCACGCCCAAGGAAGATGGGTACTCCCTTGCTGAGTCTGGTCTTTCCAAGGTTTCTCTCCAAACTTTTTGGAGTTTTTTTCCTTGCCACAGTCGCCAATGGCTTGCTCACAGGGGGTGTTGTGCCAAGTCCTGTCTTCCCCTCGGGTCCTTTATCTTTAAACTTAGATTCCATAGTAATTTAGCcatacaaatgttaataaaaaggagcttaaaagtaatttaaaataagtaaaaataggCTTAAGAGTACAAATAAAGCTTAGTCAATCATATCATCACAATTTAGGATATTTATATGCAGCTTAGGTTTGAATGTATTTGCCATTAATAAATACTAATGAGTAAAATGTTTGCTCCATAAACTATTTAGTGTTATAAatcaatgtaactttttttttttctcagattagAGCCGCA
>TCONS_00052367
acagGCACAGCTTTAACACAACAGCAGCCTTTTCAAAGTGGACAGAATTCTTTGAGATTCAATCTAAAGCTAAgtattttgtttcagttgtttgTACTGCCTTGTAATACAGTCACATTTTCAGCATAATGTTAAATCTTAGTCTCATTCaagtgttgtgtttttttatgtttttactacCAGAAGACCCAAGAAGATGTGTTGACTGAGAAAACAAATGTCCTGCAGTATTGTTGAGGAAGACATCTGCCTAACTATATATTGGAGAAGACCAGGTGTATGCGCACTACGGCATTGCAGAATGATAGACCAGAGGAAGAACATCTCTAATACAGAGGTATTCTGAAACAAGAGAAGACCAGGTGTTTGGCATTGCACACCACAGCATTGCAGGATGACGGACCAGAGGATATAAAGTCTGTGCATGCCAGATCCAGAGGCCAGATGGTGGAAGACGGTTTCCTGCAACATTTAGATAATTTTAacgttgtttaaaaatgttattagcttatacatttaaaaaatgttgttacGTGCCACGCCCAAGGAAGATGGGTACTCCCTTGCTGAGTCTGGTCTTTCCAAGGTTTCTCTCCAAACTTTTTGGAGTTTTTTTCCTTGCCACAGTCGCCAATGGCTTGCTCACAGGGGGTGTTGTGCCAAGTCCTGTCTTCCCCTCGGGTCCTTTATCTTTAAACTTAGATTCCATAGTAATTTAGCcatacaaatgttaataaaaaggagcttaaaagtaatttaaaataagtaaaaataggCTTAAGAGTACAAATAAAGCTTAGTCAATCATATCATCACAATTTAGGATATTTATATGCAGCTTAGGTTTGAATGTATTTGCCATTAATAAATACTAATGAGTAAAATGTTTGCTCCATAAACTATTTAGTGTTATAAatcaatgtaactttttttttttctcagattagAGCCGCA

Function

GO:

id name namespace
GO:0060078 regulation of postsynaptic membrane potential biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0060079 excitatory postsynaptic potential biological_process
GO:0099565 chemical synaptic transmission, postsynaptic biological_process
GO:0060291 long-term synaptic potentiation biological_process
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052756 False 2349 lncRNA 0.35 1 42507482 42509830
TCONS_00052367 True 954 lncRNA 0.37 4 42507830 42509830

Neighbor

gene id symbol gene type direction distance location
XLOC_025641 BX537305.1 coding upstream 2967 42497814 ~ 42504515 (+)
XLOC_025640 NA coding upstream 9716 42490459 ~ 42497766 (+)
XLOC_025639 NA coding upstream 300508 42194210 ~ 42206974 (+)
XLOC_025638 mrm2 coding upstream 378417 42126062 ~ 42129065 (+)
XLOC_025637 snx8a coding upstream 387310 42090418 ~ 42120172 (+)
XLOC_025643 NA coding downstream 244827 42754657 ~ 42755168 (+)
XLOC_025644 psmg3 coding downstream 409016 42918846 ~ 42920062 (+)
XLOC_025645 tmem184a coding downstream 413445 42923275 ~ 42957609 (+)
XLOC_025646 ints1 coding downstream 489447 42999277 ~ 43060971 (+)
XLOC_025647 si:dkey-43p13.5 coding downstream 576718 43086548 ~ 43092262 (+)
XLOC_025429 BX649540.1 misc upstream 12258446 30248739 ~ 30249036 (+)
XLOC_025636 NA non-coding upstream 544736 41954893 ~ 41962746 (+)
XLOC_025630 BX537310.1 non-coding upstream 1006957 41500409 ~ 41500525 (+)
XLOC_025629 NA non-coding upstream 1441068 41043023 ~ 41066414 (+)
XLOC_025648 NA non-coding downstream 592180 43102010 ~ 43135493 (+)
XLOC_025649 NA non-coding downstream 690487 43200317 ~ 43328759 (+)
XLOC_025652 CU138533.2 non-coding downstream 1140211 43650041 ~ 43653791 (+)
XLOC_025653 NA non-coding downstream 1175834 43685664 ~ 43687657 (+)

Expression


Co-expression Network