XLOC_025645 (tmem184a)


Basic Information

Item Value
gene id XLOC_025645
gene name tmem184a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42923275 ~ 42957609 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050492
tgcTGTTGTGTTGTTGCGAAGTACGTACACCTGCCCTAATTTGAAACCGACTTGTGAGCTTCTTTTGTGTGGAATCGCGAAAAGGCTTTTGGAAAAACCGATCCTGTACACCTTCGCTTTGGGATTTTCATCACCATCCGCCAGGTCATCTGTTTCCGTCTGTTTCCATCGAGCTGAGTGACGTCCGTCAGACCTGTCTGTCAATAGTTCAACGAGGAAGTGTCGTCGCGGGCCGACTCTACCTATGGCTAACTTGCATGTCGTTTTCTGATACTTGCATAGAGtaaaatatatgcaatatatGAAGTATTTTAGTCCCACAGCGATGTTTAGAGTAAAACTGACGTTTATTTGACTTTTAAGCCATTTACGTTTGATCACAATCATCTCTTCACGTGTTGATACAGTATCAGGATGAATGAAACTACTCTAAGAATTCTGTCAGCGAGTTCAGATAAAAACATGGACAATGTTCCTTTGCCTTCATACTCCCTGCTGTCAAATAACACAGACTTTTTGAACAAGACCGTGATCAGGTCTGCTAATGGAACTGAAGTTGTGGCAGACGACCAGATCTTCCTTAGCACGGCCACAGCTCAAGCCCTATCAGGCATTTTTGTATGGTCCGCGCTCATCCTCACCTGTCATCAGATCTACTTGCACCTGAGGTCGTACACGGTGCCAAACGAGCAGCGCTACATCATCCGCATCCTCTTCATCGTCCCCATCTATGCCTTCGACTCATGGCTCAGCCTGCTGTTCATCACTAATGACCAGTATTATGTGTATTTCGACTCTGTTCGTGACTGCTATGAAGCATTTGTGATATACAACTTCTTGAGTCTGTCTTTTGAGTACCTTGGAGGAGAAAGTGCCATCATGTCCGAAATAAGAGGAAAGCCCATTCAGTCTAGTTGCCTGTATGGCACATGCTGTTTGGTAGGGATGAGCTACTCTATTGGCTTCCTGAGATTCTGCAAGCAGGCCACACTTCAGTTCTGCGTCGTCAAACCCATCATGGCTGTCATCACCATCCTTCTGCAGGCGTTTGGCAAATATCACGATGGAGATTTTAATGTAACAGGAGGTTACCTGTACATCACCATCATCTACAACTTCTCTGTCAGTTTGGCTCTCTATGCCCTCTTTCTCTTCTACTTCGCCACCAGTGACCTTCTGAGACCTTTTGAGCCTGTGCTCAAGTTCCTCACCATCAAATCAGTCATCTTCCTCTCGTTTTGGCAAGGCATGGTTTTGGCTATTCTGGAACGCTGTGGTGTGATCCCAGAAGCTCAGTTCATTGATGGTCATGAGGTTGGTGCTGGAACAGTAGCAGCCGGCTGGCAGAACTTCATCATCTGCATCGAAATGTTCTTCGCCTCCATCGCCCTCCGCTACGCCTTCACCTCCAGCGTGTACCGCGAGAAGAAAAACGAAGCACCAGaaaATGTGGCACCTATGCACAGCATATCCAGTGGCTTGAAGGAGACCATTAACCCTGGAGACATGGTTCAGGATGCAATCCACAACTTCTCTCCCGCTTACCAGCAGTACACCCAGCAGTCCACGCAGGAAGTGGTGCAGCCCAATGCAAACGGCAAACCgggaatcagcacctccaagagCACCAAAAAATCAGACAAAGTGATGCTGATCGACACAGATGATGAGTTCTAGCTTGAATCTGTCCTGTCCCTTCTATTTATTGAATCTGAAACTAATTTAACTCTTTCTAACTTTAATACCAATGCTAATCATGTAAATCAGCTcatgatttgtttttatatatctatatatgaaGAGATCTTAAAAAAGGGATCTGAGCACACCAGGAATGAAAGGAGATGGTGTCAGGAAgggcttgttttgttttcttcactGTAGTCCGGAGCTCATCCCGTTGCGGCAGTTGATCTCTGTGATGAAGAGTCCCACTTTTCTACCAAGCCAATGTCTTATAAACATGAGGGTGTTTGGATGGAAAGAATGAGGGAGCATCTGTCCGTTTGAAGTATTTGCTCAGCATCCCTCTGCTGGTTCCCAGGACAAATTGAACGGCTCCCAAAGACGCCCTGGCTTTGGAGATGGCACTTCAAACATTTGTATGTGACTCTTTGAAACCTCCATATCAATCATACCACACGGACAAAGTGTGGGACTGAGCACTGGCCCCCCCCTGTTTGATTCGGAGGTTCATTAATTTTCACACCAGGTCTTCAAAGAGAATATGATCTGATGCCGAAAAAAAGGAGAGTCTCCGCCACTGTTGCGTATTTTAATTGCAGATCATTCGTATTCATCCAATGTTTGGTTGGGTAAAGCTTTAACCTATGATGTTTTAAGTGTTTAACAAAACAGGCGGTTACCTGGGCTAATTTGTTGACGTTAAACGATGTTGTTTAGCTCTCCGTTCAAGAGCGATTCGTTCCTTTTATGGTTTACATGTGTAAACAGTCCAAGATGAAATACTTCAGGCGTCATGAAAAAGccattgaaaatgtttatttaccgCTTGTTACCACAAAGTGAACTCCTGATCACTTTCCAAACAGAATTTGACGTCTTTGAAACCCTGCCTTTTGAAGTTTCTGAGCACACCGCTTGTTATGTCTGAATacgaaatagtttttaaatgttaGCCGGTATGTTTGTTAATATGCATTGATCttgttttgttaattatttctCGAAAATATACAGACTTGAGAATGTAATAAGTGTTCTCTTTACTTTATAGACAAAATAAGGGTGCCTATTTTGTCTGTAAAATAGCCATTGAACGAATGTCGGGAGGCAGCATTATACGAGTATAACTTGTGCCAATGATTGCTGCCTTATATATGTGGATGAAGGAAGTTGTGTTTATATATTGTGTGATTCAGAGTATGATATCTTATAAAGAAGCTACCTGTACAGTTGGTTTTACAAATCTGTTCTcataggaaataaatgaatgagagtGAAA

Function

symbol description
tmem184a Acts upstream of or within regulation of angiogenesis. Predicted to be located in membrane. Predicted to be active in early endosome membrane. Predicted to be integral component of membrane. Is expressed in gut; hypothalamus; pronephric duct; sensory system; and yolk syncytial layer. Orthologous to human TMEM184A (transmembrane protein 184A).

GO:

id name namespace
GO:0045765 regulation of angiogenesis biological_process
GO:0006810 transport biological_process
GO:0031901 early endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2925 Acts upstream of or within regulation of angiogenesis. Predicted to be located in membrane. Predicted to be active in early endosome membrane. Predicted to be integral component of membrane. Is expressed in gut; hypothalamus; pronephric duct; sensory system; and yolk syncytial layer. Orthologous to human TMEM184A (transmembrane protein 184A).

Ensembl:

ensembl_id ENSDARG00000104538

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050492 True 2965 mRNA 0.43 9 42923275 42957609

Neighbor

gene id symbol gene type direction distance location
XLOC_025644 psmg3 coding upstream 3213 42918846 ~ 42920062 (+)
XLOC_025643 NA coding upstream 168107 42754657 ~ 42755168 (+)
XLOC_025642 NA coding upstream 413445 42507482 ~ 42509830 (+)
XLOC_025641 BX537305.1 coding upstream 418760 42497814 ~ 42504515 (+)
XLOC_025640 NA coding upstream 425509 42490459 ~ 42497766 (+)
XLOC_025646 ints1 coding downstream 41668 42999277 ~ 43060971 (+)
XLOC_025647 si:dkey-43p13.5 coding downstream 128939 43086548 ~ 43092262 (+)
XLOC_025648 NA coding downstream 144401 43102010 ~ 43135493 (+)
XLOC_025649 NA coding downstream 242708 43200317 ~ 43328759 (+)
XLOC_025650 zfand2a coding downstream 416258 43373867 ~ 43397134 (+)
XLOC_025429 BX649540.1 misc upstream 12674239 30248739 ~ 30249036 (+)
XLOC_025639 NA non-coding upstream 716301 42194210 ~ 42206974 (+)
XLOC_025636 NA non-coding upstream 960529 41954893 ~ 41962746 (+)
XLOC_025652 CU138533.2 non-coding downstream 692432 43650041 ~ 43653791 (+)
XLOC_025653 NA non-coding downstream 728055 43685664 ~ 43687657 (+)
XLOC_025654 NA non-coding downstream 753458 43711067 ~ 43755843 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_02458763_02477098 TMEM184A coding CI01000046 null 2458472 ~ 2477098 (-)
bowfin (Amia calva) AMCG00018090 tmem184a coding CM030135.1 CM030135.1 1272583 ~ 1291830 (-)