RNA id: TCONS_00052755


Basic Information

Item Value
RNA id TCONS_00052755
length 2913
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id XLOC_025640
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42490459 ~ 42497766 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAAACGGGTGTGGTCCTCTCCATAAATGGAGAAAATCTTAATTCTGCAGGTTGATTGGCTCTGCCTTGCCTTCTATTGGCCAACGATGATGAGCCGTCTTTAGGTTCCAGAACTTTCTGCGGTGAGTAGGTTGTTTAAGAGGTTTGCTCGTATAATTGCTGTTTAACGTTCAATTAAAACATGTATATTACAAAGTGTAGATTGTTGTTGCTTGTAGTGGATGTAAAAGTACCCATTCACGCCCTTTAGTGGGATTTCAGGTGTCCATAATAATTCAGGCTGAAGCCGTTGTACTAACGGTTAGATCTTAACTTCATGCAGGCTGCTTTATGACGTACAGTCACtttatactgtaataaatttTAAACTGAAGTCGCGATTAGAACAGGTACGATTCAAGTCGCAAAAGCTGCGATTTTTTCGATAAATAACGTTACTGTGGTGAGGGCGGCCCATTAAAACATCCTACTAACTATCGTCAACGTACTTAATCAGCAGTCGACCGTTACAACAGAACCCACGAGCCCGTATCTCACTGATATGGAGATGAAATGGAAGCTGTGAGCtaaaggtctgcattcccgcggctgtactGAAGCTGAGAGCGAgacggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagacatTTGACCTGCTTGCTTAAGGTAACGTGTCCTCTCGGCTATTACAGCGAGTCTTGTGGTCAGACACACATAAGCATGTTACCCTGCAGCTGGAGTTTTCTTTACCGCGTTTATCATGAATCAGCTGTGATATCCGCGCATTTAAGACTTTAACCGTGGCCGTTTGTCCGTATCACCGTCACTCCGATGAAAAACTCGAGCCGCAGTAACCGCTGTCGAGAAGAaccgcagccctttctgttgagtgtgGGAACACAATGACCGATTATAGGTGTTTAAGAACTTGTTCGACAGCGCTAAAAAAGCAATCGAGATTATATTTACATCATTAGTTTATTTGTTGTAAATGCTCTTGTCCTGTGCACTTAGTTTAGCTTTGTTTGAAACATTCAAGAACAGTGTTTTCTTTCAGCAGGTAAAATAAACGAACAAAtgatatgtaaatgtataaattatacattttattgcaAGAATTTTTGTGCTGTgaattaaaatctaaaattgtgtatggaaagcattgtcagtgCACTGTGAATGTCGtgaaatcaatataaaaaaatgttacacaatcTAAATGTAAAGGTTTTTATACATGTTTACTTAATATTGCATATAGAATTTATGTAATTGACATTAAAATACAATAGTCATTTCCCTAGAACAAATGTGCTTTTTATGCGACATGATTGTTTctacttttatctttttagaaCTTTTTCACCAGCTATCCATCCTGTGTCAGGTAATGATTTAATATATTGACAGGGTAAAAAGAAACATGCTGTACTTACAAAAATTCtcgatttttttcagcagttaaACTCACTTTTTGGATTGTAATCAGTTTTTAAGATAACATTAATTTCATACATTTATCAGACCACTACTGTAATATGACTAAGGGGGGAAATTAAGTGACCATTCTGTTTCTCCAGATTTGTTAGTTATGGGCTTgagttaaagggatggttcactcaaaactgaaagttctgtcatttactcaccctttgtgTTTCATACATTCTTCTGTTGAGCAAAAAATATACTTtcaagaaagctggaaacctgtaaccatttacttccatagtattttcctATGTACTATGGAAGTCTAGTGTTGCTccgatttttgcttttttttccctcCAAAATATCTTTagtattcaacagaataaagttagtcataaaggtttgtaaccacttcaGTGTAAGTAAATGCATAAAAGTGAGTCAATTGTTTATTTTGGGGGAATTGTCCcttaaaaaattattcttttaCATTGTTTGGTTACtacttttcaaataaatattttgtttttttttttaaaggaaagtaCAGTTGgtctaacactttttttttttttttttttttggtgtgtctGAAAAGTGTTATTCCATAGaatattgatttcttaaaaaaaaacacatttgtattgTGTAAAATCCAGTACAAACAtgtcttgaaataaaaaaaaaaacaagaattggtTCACTGAAATGCATAACTACAGGTCTAAATTGTAAACCCAGAGAAACAGTTAAGGGATCTGTTTTTCCACGTGCGAAATAATGGTCTGTTTTTCCCCCTACATCACTTTTCTGAGCATCTTTTGCAAATGACTCTGATAGTATGTTTGTCACAAATTGGCTCCTTTAAAAAATAGATACATTCTTTTAATATATccataacaatttattttatttacagattAACTATGTTATTGATAAGTGATGTTTACATGGAGAGAAGGTAATGCATAGTTGACTAATTTTCATTAAAGTAATTTTTTGTCCCTTTTACAGAGAGACTCGCCAAATATTCCAGATTCTTCACTGCACTTTGCATCTTGGTGAGTGTTggataacatttttatttcaaaaattgCATAGTTGACTAATTTTCATTAAAGTAATTTTTTGTCCCTTTTACAGAGAGACTCGCcagatattccagattcttcaCTGCACTTTGCATCTTGGTGAGTGTTggataacatttttatttcaaaaattgAGAAAACAGTAGTTGTTGCTTTGACCTAATTTGTtctattttcttcatttttcagGTTTCctgtgaaaaataaaacaactacttctgttgttttatttttcagtgttCTCCATTTTTACAGGGATAACgtttcttttgttttaataaacttagcattttgtaatttatatattctttttttgttttgtttttttt

Function

GO:

id name namespace
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050488 lncRNA upstream 283485 42194210 ~ 42206974 (+) False XLOC_025639
TCONS_00050489 lncRNA upstream 283485 42203476 ~ 42206974 (+) True XLOC_025639
TCONS_00052754 lncRNA upstream 527713 41954893 ~ 41962746 (+) True XLOC_025636
TCONS_00052753 lncRNA upstream 1424045 41043023 ~ 41066414 (+) True XLOC_025629
TCONS_00052752 lncRNA upstream 1541460 40945040 ~ 40948999 (+) True XLOC_025628
TCONS_00052756 lncRNA downstream 14111 42507482 ~ 42509830 (+) False XLOC_025642
TCONS_00052367 lncRNA downstream 14459 42507830 ~ 42509830 (+) True XLOC_025642
TCONS_00052757 lncRNA downstream 261286 42754657 ~ 42755168 (+) True XLOC_025643
TCONS_00050497 lncRNA downstream 608639 43102010 ~ 43135493 (+) False XLOC_025648
TCONS_00052758 lncRNA downstream 706946 43200317 ~ 43202750 (+) False XLOC_025649
TCONS_00050487 mRNA upstream 361394 42126062 ~ 42129065 (+) True XLOC_025638
TCONS_00050485 mRNA upstream 370287 42090418 ~ 42120172 (+) False XLOC_025637
TCONS_00050486 mRNA upstream 370594 42090464 ~ 42119865 (+) True XLOC_025637
TCONS_00050483 mRNA upstream 563590 41917499 ~ 41926869 (+) False XLOC_025635
TCONS_00050490 mRNA downstream 4443 42497814 ~ 42504515 (+) True XLOC_025641
TCONS_00050491 mRNA downstream 425475 42918846 ~ 42920062 (+) True XLOC_025644
TCONS_00050492 mRNA downstream 429904 42923275 ~ 42957609 (+) True XLOC_025645
TCONS_00050493 mRNA downstream 505906 42999277 ~ 43060971 (+) False XLOC_025646
TCONS_00050494 mRNA downstream 506473 42999844 ~ 43060800 (+) True XLOC_025646
TCONS_00050475 other upstream 989934 41500409 ~ 41500525 (+) True XLOC_025630
TCONS_00050468 other upstream 1695580 40792230 ~ 40794879 (+) True XLOC_025623
TCONS_00050467 other upstream 1695619 40791746 ~ 40794840 (+) False XLOC_025623
TCONS_00050466 other upstream 1696907 40791746 ~ 40793552 (+) False XLOC_025623
TCONS_00050465 other upstream 1697471 40791746 ~ 40792988 (+) False XLOC_025623
TCONS_00050499 other downstream 880524 43373895 ~ 43384178 (+) False XLOC_025650
TCONS_00050506 other downstream 1221328 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050507 other downstream 1223456 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050515 other downstream 2394666 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050528 other downstream 3141706 45635077 ~ 45635186 (+) True XLOC_025668

Expression Profile

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