RNA id: TCONS_00052758


Basic Information

Item Value
RNA id TCONS_00052758
length 449
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_025649
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43200317 ~ 43328759 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATAACATCAACTGTTGTTTTGACATTAGCACTGGGGGCATCGGGAATAAAGCACAGACAAACAAGCGGCGATGAAAAAGAAGATCTCTGGGAAAGGCTCTGTATGTGTATGACAAACACAGTGGTTGTCTGCGCTCGGTTGCCAGGTTGATTTAAGGGCAAACAGATCGCTGTAATGAGGATTGTGATCCCTGAGCTCTGCCACGACCCTTCTCCTCGCCATCATCCCCCTACAACCTCTGACCTCCAGGACACACCCTGTCAGCTGAAACTAATTAGAGTTTGATGACGTGTGACCGCAACGCTGTCTAATGGTAAAATAGGGCACTTGAGAGAGGGGGAAAAGACGTTAATGAAAATAAGGGAAGTGTCAAATGCTGTGGAGGATAATGGACAGCACCTACTTACTAATAAgtgaaaatacagtgcgGTGGCTCTgggattagca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050497 lncRNA upstream 64824 43102010 ~ 43135493 (+) False XLOC_025648
TCONS_00052757 lncRNA upstream 445149 42754657 ~ 42755168 (+) True XLOC_025643
TCONS_00052756 lncRNA upstream 690487 42507482 ~ 42509830 (+) False XLOC_025642
TCONS_00052367 lncRNA upstream 690487 42507830 ~ 42509830 (+) True XLOC_025642
TCONS_00052366 lncRNA upstream 702551 42490501 ~ 42497766 (+) True XLOC_025640
TCONS_00050504 lncRNA downstream 447291 43650041 ~ 43653791 (+) True XLOC_025652
TCONS_00052760 lncRNA downstream 482914 43685664 ~ 43687657 (+) False XLOC_025653
TCONS_00052761 lncRNA downstream 483484 43686234 ~ 43687657 (+) True XLOC_025653
TCONS_00050505 lncRNA downstream 508317 43711067 ~ 43755843 (+) False XLOC_025654
TCONS_00052762 lncRNA downstream 509119 43711869 ~ 43755843 (+) False XLOC_025654
TCONS_00050496 mRNA upstream 64824 43102010 ~ 43135493 (+) True XLOC_025648
TCONS_00050495 mRNA upstream 108055 43086548 ~ 43092262 (+) True XLOC_025647
TCONS_00050493 mRNA upstream 139346 42999277 ~ 43060971 (+) False XLOC_025646
TCONS_00050494 mRNA upstream 139517 42999844 ~ 43060800 (+) True XLOC_025646
TCONS_00050492 mRNA upstream 242708 42923275 ~ 42957609 (+) True XLOC_025645
TCONS_00050498 mRNA downstream 171117 43373867 ~ 43393253 (+) False XLOC_025650
TCONS_00050500 mRNA downstream 171168 43373918 ~ 43380808 (+) False XLOC_025650
TCONS_00050501 mRNA downstream 171821 43374571 ~ 43397134 (+) True XLOC_025650
TCONS_00050502 mRNA downstream 257946 43460696 ~ 43475780 (+) False XLOC_025651
TCONS_00050503 mRNA downstream 264845 43467595 ~ 43479049 (+) True XLOC_025651
TCONS_00050475 other upstream 1699792 41500409 ~ 41500525 (+) True XLOC_025630
TCONS_00050468 other upstream 2405438 40792230 ~ 40794879 (+) True XLOC_025623
TCONS_00050467 other upstream 2405477 40791746 ~ 40794840 (+) False XLOC_025623
TCONS_00050466 other upstream 2406765 40791746 ~ 40793552 (+) False XLOC_025623
TCONS_00050465 other upstream 2407329 40791746 ~ 40792988 (+) False XLOC_025623
TCONS_00050499 other downstream 171145 43373895 ~ 43384178 (+) False XLOC_025650
TCONS_00050506 other downstream 511949 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050507 other downstream 514077 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050515 other downstream 1685287 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050528 other downstream 2432327 45635077 ~ 45635186 (+) True XLOC_025668

Expression Profile

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