RNA id: TCONS_00050503


Basic Information

Item Value
RNA id TCONS_00050503
length 4732
RNA type mRNA
GC content 0.37
exon number 2
gene id XLOC_025651
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43460696 ~ 43479049 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTGATCACGAGGACCTGAATAAAGCCATGGGACACTGGAATGCCTCAGAGAGCTATCAGCTCAACCCAGCCAGTGTCATCGTGTCAGTGGTCTTCTCGCTCATCTTCCTCTTGGGGACCATCGGGAACAGTCTGGTGCTGGCTGTGCTCCTTAGAAGTGGGCAGGTTGGGTACAACACCACCAATCTGTTCATCCTCAACCTCAGCGTAGCCGATttcttcttcatcatcttctGCGTGCCTTTCCAAGCAACCATCTACTCCCTGGAGGGTTGGGTTTTCGGGTCCTTCATGTGCAAGGTGGTTCACTTCTTCATCAACCTCACCATGTATGCTAGCAGTTTCACACTGGCAGCGGTGTCGGTGGACAGATATCTGGCCATTCGTTACCCGTTGCGCTCCAGAGAATTGAGAACGCCGTGTAATGCTGTTGTAGCAATGGTGGTCATCTGGGGCCTGTCGCTGGTTTTCGCTGGGCCTTACCTGAGTTACTACGACCTCATCGATTTCGAGAACAGCAATGTGTGCGTGCCTGGATGGGAAGAGCATAACCGTAAGGTTCTGGACACATGCACCTTTGTTTTTGGCTACGTTATTCCAGTGCTGATCGTGAGCCTGTCCTACACCCGCACCATCAAGTACCTCTGGACAGCAGTCGACCCGCTTGATGGGATGTCGGAGTCGAAACGAGCAAAGCGCAAGGTCACCAAGATGATCATTATAGTCACGGTGCTCTTTTGCATCTGCTGGCTGCCGTACCATGTAGTGATTTTGTGCTACCTCTATGGAGACTTTCCCTTCAATCAGACCACCTATGCCTTCAGGCTGCTGTCCCACTGCATGGCCTACGCCAACTCCTGCCTCAACCCCATCGTTTACGCCCTGGTGTCCAAACACTTTCGCAAGGGCTTCAAGAAGGTTTTCAGCTGCATCCTCAGCAAGAAGGGACGGAATAAGGTGCATGTGGTCAATGTGGCCAACACCGTTCCCGGATTCGAAGCGGGATCCACTGAAGTGTCTCAAATGAACGAAGAGAACGCCAGACAGAATGAAAGTGAAATGGTCAATCGCCCACTCGCGCAGCCCCAGGACACCACAATGACTATAACGCTGCCATTTCAGAATCAGCCATGAAAATAAAGTGCACGGCTAATGATGCCTTACAGAAGCCTTATTAAAAGAAAACACTCAAAGTGAGCCGGAGGATTTCTGCAGCTTTGATCGACATCACCATGGTTCTGCATTGACTGAAGGAGCACAGCGGAGAGTGTAGTTATTTAACATTCAAATCGCTGCGTGAATTGAAGTTGTAGATTCAACTGGGTTTTTCGTACCGATGCATCCTCGCGTTCTGATTGGTTATTTGGGTTGTTGTGCAACATAATGTCTTCTTTCATGAGCCTTTATTTATTTCAGCGAcagcattgtttgtttgtttcctatTACCCTCTAAGCATGTTTCAATTTAATGCTGTGATGACTATTCTCCTGTGAAAATTTGTTACCAATTATTGTGCGTAACACTTTAATATCTGAAGAGCCCTGTGTCTTTATGTGAGCAAAGCTGTGATTTCCTACTGTGTGTGAAGCTTTGAAGAAGACTCTTTGATTATGCTTCTCAGCTTCGCTTAACaagctctttaaaaaaatatgcttaTGTTAAGTACTATGTTCTTGCTCTTACCTCTGTTTAATAACTCGGATATTCTCTGCTGTTTTGAATGTTTAGACATTCTTTGAttgttgtattttatataaatcaCTATAGATTAAATTCAACATCCCTAAAATCGGAGAAGCTTAGAAATCCAACAGTTTACTGTGAATGGTTCTTGTGCTGCCTTAAAGGACTGTTCTTTATTCATTACCACTTCAGCTCAGTTGACATCTTTGAGGGTATAATATAGAACTTCTCGAATTTAAAACCAATTTGTAAATCATACAATGTGAACTATTTCAATAGCAGCTTACCGCTGAGCACAATATGCATGTTTATAGTTCACCCATAAACGAAAATGTGCTCAGCATCAGGTTATGCATGATAAAGTTGAccttatttgttgttttattttatcttatttcatttatttattttttatcagaaGAACATTAAAGTAGATTATTAGCTGATACTGTGGTCATTATATATAACTCAACAGATAGAGACACTTTGGCTGgagtaaaaaatacagtaaaattcaaATTAATTCCAGCAATTGATGCTGATTGCTTAAAACTGAGAGAAGGGATGTGTGTGGGGTATATTATTTGTCAAAGTGGTACATGTGCTTATTCTGGATCCAGCAAACTAGTCCTGCAGTCTCTGAGGAAAATGCAAACAACCATTTGCTGTGGCTGTGTGGATTTAAGGTAATTTAGGTCATTTTTCTAAACAGACTGACCatttttgcttcaaattaaaTTGTATCATCTGGAGCCCtgtgaaaaaaaagattactGGATATATGTTTTTTATCCATCTACTTTGGTGTTCtacttataaaaaatacaatatctaCATCTTAGATTGCCTGAAATGGGTAAATTAACAGCAGCTTTCCAATTTTGTGTGGTCTAgccctttattaagatttttggGCAGAAAACAATGCTGACTAATCTTTACTGTGTAAAGTCACTGTCAATTTTACAATTTGCAtctaaaacaacaaagaataaaggTACACACTTCACATTTATTACTTTGAATCCCCACAGCacttaaaagtaaaaacagataCAGTataacaggcctgtagccagcctggggaaaagggtggttcttttttctgaaaaaattgacctttttgcagttattcacctcattttctattcatttataaaatttaaatactgaATATAGGTGacatttgctggattagcttgtcgggtggtcatcataaccacactttttgatgcaccAAAAATCtttcctaaatatttagaatcaagaaatatgacaaataaatatttttttaatttattacatcatataccATTAGAAAAACTTTTACAATACAAACTGTAGCTTATTGTTATTTAtgaggcaaataacaaactggccagcacattcatcTTTCCTCAATCAGAATCTGGCCATTTGAACAATAGAaaactaaaacataataataagaagaagaagaacaacaacaacaacaacaataatgataataataataataatgataataataataataataataataataataatgataataataataataataataataataagtttcccagtgatggattgcagctggaagggcatccgctgcgtaaaatatatgctgtataagttagcggttcattccactgtggcgacccctaattaataaagggactaagccaaaaagaaaattaatgaatattaattttaataataataatttagagcttcacacttttttattggtcatgtgttttttttttcaagattaagaattaaaataaaaggcaaatagGACAAATGGGCTCATGTATGAGACAAATTTTGGACCTTTGTCaatgaggggtgggtcttccgaacaACCCGAACGCCCCCTGGCTTGATATCTTTGATATCAAGATTCAGttctattttacaatttttaagaaTTGGGTAGTAGAAAATATGTGCACCGgcactctgcatatttattttagtttttttttgctaatttatatataaatatttattcatatatttgtttgttgccaaaaaatgtaaattgtgatACCATTTATTCACCCTCCACTTGTACAAAACTGTAAGAATTGAGAACACCAGTAGCCCAtgactaccagtttccaacattcttcaaaatatcttattgtttccaacagaataaatataaattcagaAAGATTTGTAACCactgtattcaattcaattcaactgtatttccatagcacttttacaatgtagactgtgtcaaagccagcctgatctcacaaggaaatgtaagatttttatatCCTGTCAGTTTAGCAGCTAATTTTTAACCTAACCATCATTggttgatgagcaaatcgtactacattgtacgaattagatcctacaaattcatatgaattagccactaaatcaaacagTTACGAAGCAGagttgtcaaagcagcttcacatagaagattgtagtgaattgaaacagtgtatgAACAATTCAATTTTTGGTAGAACTATCCTTTCAAACAAGACCTTGCTTTTAATATGGCCTAGTTCTGATATTCTGGTACAGAATAAATATACCTAACatataaatcttttatttttttcactacCTTGGAATTAAAACCAGCAATCAAGAACAATCAGAATTGTTAAAGTTGGAAGGGATAAAAGAAATCAAACAATACCCGCAAAGGCTGCTGATTGAGCTTATGTGTATTGAATACAGAATGTTTCTTTATCTGTCTTGAGTTCATTCATAATGTATAATGTACTGTAGCTACACAGCAAGTGCTATGTTGGATATTTCGAATTTGATGTTGACAGtgaatttcaataaaaaaagtgcTCTGGTATTCCTCTCGGACATGCATAATGTTTTAATACATGCAAATAAATCAGGAGATAAAATGACCCCAGCCGGATTAGCATAGCTTCAACCAGCACCTCAAGGGATGTTTTATACTAGTTCAAACTGTATTCCCTCAGAGAATCAATGTGAGAGCTGCATCTTTAATTGAGAATTAAAGTTTAATGTTTtccactgcaaaaaataaataaataaataagc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004966 galanin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-48 Enables galanin receptor activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway and neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and spinal cord. Orthologous to human GALR2 (galanin receptor 2).

Ensembl:

ensembl_id ENSDART00000188300

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052759 lncRNA upstream 138836 43200317 ~ 43328759 (+) False XLOC_025649
TCONS_00052368 lncRNA upstream 252539 43200616 ~ 43215056 (+) True XLOC_025649
TCONS_00052758 lncRNA upstream 264845 43200317 ~ 43202750 (+) False XLOC_025649
TCONS_00050497 lncRNA upstream 332102 43102010 ~ 43135493 (+) False XLOC_025648
TCONS_00052757 lncRNA upstream 712427 42754657 ~ 42755168 (+) True XLOC_025643
TCONS_00050504 lncRNA downstream 170992 43650041 ~ 43653791 (+) True XLOC_025652
TCONS_00052760 lncRNA downstream 206615 43685664 ~ 43687657 (+) False XLOC_025653
TCONS_00052761 lncRNA downstream 207185 43686234 ~ 43687657 (+) True XLOC_025653
TCONS_00050505 lncRNA downstream 232018 43711067 ~ 43755843 (+) False XLOC_025654
TCONS_00052762 lncRNA downstream 232820 43711869 ~ 43755843 (+) False XLOC_025654
TCONS_00050501 mRNA upstream 70461 43374571 ~ 43397134 (+) True XLOC_025650
TCONS_00050498 mRNA upstream 74342 43373867 ~ 43393253 (+) False XLOC_025650
TCONS_00050500 mRNA upstream 86787 43373918 ~ 43380808 (+) False XLOC_025650
TCONS_00050496 mRNA upstream 332102 43102010 ~ 43135493 (+) True XLOC_025648
TCONS_00050495 mRNA upstream 375333 43086548 ~ 43092262 (+) True XLOC_025647
TCONS_00050508 mRNA downstream 295320 43774369 ~ 43808322 (+) True XLOC_025657
TCONS_00050509 mRNA downstream 346736 43825785 ~ 43831030 (+) False XLOC_025658
TCONS_00050510 mRNA downstream 346969 43826018 ~ 43829729 (+) False XLOC_025658
TCONS_00050511 mRNA downstream 346970 43826019 ~ 43826520 (+) True XLOC_025658
TCONS_00050512 mRNA downstream 476815 43955864 ~ 43987286 (+) True XLOC_025659
TCONS_00050499 other upstream 83417 43373895 ~ 43384178 (+) False XLOC_025650
TCONS_00050475 other upstream 1967070 41500409 ~ 41500525 (+) True XLOC_025630
TCONS_00050468 other upstream 2672716 40792230 ~ 40794879 (+) True XLOC_025623
TCONS_00050467 other upstream 2672755 40791746 ~ 40794840 (+) False XLOC_025623
TCONS_00050466 other upstream 2674043 40791746 ~ 40793552 (+) False XLOC_025623
TCONS_00050506 other downstream 235650 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050507 other downstream 237778 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050515 other downstream 1408988 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050528 other downstream 2156028 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050561 other downstream 3981439 47460488 ~ 47460603 (+) True XLOC_025690

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00018079 True 1201 mRNA 0.58 3 CM030135.1 971766 ~ 978842 (-)