RNA id: TCONS_00052767


Basic Information

Item Value
RNA id TCONS_00052767
length 3155
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id XLOC_025664
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 45246037 ~ 45253532 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTGCTAGCTAACACCGTGGCTAGCTAGGCCCTTCCAGGCTAACCGTTTGCCATGACAACGAAATGACTGGCAAAAGTTAATTTCCACTGGGGAACGTGCCCGACACTAGCATTAAAGTCAAACGCGCTTGACTGGCAAACGCGGTAGGCATGCAGATCACTGTCATAATACGGGGCAGTTGTTAGCTTGCGCTGCTATCGCGCTAGCCGTGACCGCTTCTTCATGCATAATTGAACGGTGCACTGCAACTCCACCCAGGCAATGACGCTCTGCTCCGACCGCTAAATGTTATGCTTACGCGCTGGGCTCGAAGGCGAAATACTTTGTCTTGTTTGTATATTTGGATGTGACATCCAGCCGTCGCACTGTCCGGCGCGAGCCCGATGCTAGAGAACAGCAGCAGATGCGCGCGCCCGACCGAGATGAAGAGTTCGGCGAGCAGCCCAAATCCGAGCGGTTTTGCGTGAGCCTCTCCTCGACTCAGCAGTTTTCTTGACAGCCGGTCTGTCGGTAAATATCTAGCGGATTCCTATAGTGATATTAGCGTGTTGGTGTGCCGTCGCGTCCTCCAGCGCTTTCCTAAAATCACTGAACACACTGCAGGGCGGCGGTGCGTCGTGACGTCACAGAGCAGCAGCAGCCTCGTTCAGAGCGCCGCATGATGTATGTCATCCAAGATCAGAAGCAGAAAATGAGTCATTTACTTCAAAGGCACGTCGTTTATCACCTTTTCATatcaattacttctGCCAGTTTGTCCAATAGAAATGTGAGCCCGGTGCAGGTTGGATGGAGGATTGGCTGGCTTGTTGCTCAGCTGAACAGTGAGTTAGAGATCTGCACTGGACAATTCTTTTAGTCCCGCTCCTGCAATGTTTTATTCCACACTCGACTGCTCCCGCCGTATATTCAGCCTTTGTTTACCCGCTGCCCGACCTGCCCTGTTTTCTACCCCAgaggttttcaaacttttaggacacACACACTTCCAAGTTTGTCCAATTTCACTCACGCCCCCCAGGCACCTCTTCCTCGAGTCAAAATTATAATGCATGAGCAAAAATCATTTACATATTACTTGCTGCTTttaaagtgtgtagaattaattaCACTGAAACATAAATATACAGCTTACCTGATTCAGTGTGATAGCTGAGTCTGTGaggacaacatgctaatttgtggaCGGATTCCTGACACGACTAACTGTAAATCatcttccactgtcaataagcatGAGCCACAGCGTACTTGCTTTTGATGTACGTACatacagaaaatgctgcttcgcaAAGACAAGTTCAAAGAGCCCTGACAGTGTGGTTGAGTCGAACATTGAATATGTTTACATGGGCAACAATAAtctaatatgattaagacaatattctgattaggggctaccatgtaaacagcgatttttgatgaccttaatctgactgaagtcataattaaactaaacagaaatggaaagaCGTGGAGAATGcgtatattagtggcattactgaagtaaacaccgcaatcaaattattactgtcatgtaggacttttcgtcACGTTTTGTGACAAGATCCATACATGCGGCTGTCAGTagaggaccacacacacacacacacattacgaaatgcaagttttttttttttttttcattcgacGTGCGGTATCAATAAAAACACTCTTCCACTAGTGTTTCATATTCACGtcaaataccccagtttgtcacgggggcatgaatgagtGAAAGTTAAACTGCCGAACTACAGTTAAAGTCGAGAAACTGAAgataaaacacccaaaattacatgagacTCAGGGAATGGATGAGACGCAGATTACATGAGACGCAGGAAATGTAAATAGCTTGGTAatgcaacattcaaaaagcacttcacgttattatattattgtcttaatcagattaaggcaaataacttttactgatgtccatgtaaacgtttaagcccaatggagcgattgtttacaagtgcggAGTCCCgggaaggagctccggatggaaagttttgttttgtgtttatctcatagttaaagttgttgcacgtccgccggttcctgcctcaaaatgagctagtttgagccacttgtacaggaagctttcagaaaaaaacaaaacagcagcgaagaaactcgacacagagacacatttacacctcactgccaactagggTTTTGGAAGTGGTGTTGCAGACCAACAgggacagcgcgcagaagtataaatgcacagctacatgcgttgcctgcgccgttggttacgctggtcacttgacgcagaagtataaaacagGCTTTAGTCAGTAGTCTTCAAAATAAGTGAAAGATcccagaagggcacttttttgtcagacattGTCATTAGCGCTgagtttatttgtatatattttacttCAACGCTTTAATTCTACAGGTGGCTTATAGTTAGCTGTGGAGCTAACGTCGATAATAATATTCCCTCTAGTGAACGCAAAAAAATCATCATCCTAATTTACTCGAGTACACGCCTCAatgtttgaaaacccctgttttACCTGACCGTTCCCACTAAATTTACTTCTGGTTTCTAaaatctgctgtttaaaattgGGTACAACCAAAATatttgtttgcccctttgtgatgaCACATGAGTGCCGCCATCAACCTGAGGttccagtcttgtgactgctaaagggtaaaactttgagGTATTCACATTGCGCAAAGGGTAAGACTTGCCTAATGGGGGTTCCCTAATAGTAAGCTGACCGTTTTCAAGCTGAAGAACAGTGCACCTTCACTTTGCTCTCCCATGTTGTTAAAGCCTGCTTTGGGGACCGTTATGCAGATGATGCACGCAGACTTACGAAAAAAAAGGCACATGCAGAAAGCACTGGTCTTGCGTTCAGCATGCATAATATTCTTGAGCACTGGCTGTACTGGTGCTCATTAAGAATGAGGAAATCACAGAGATGCTGTTCCAAAATAATGTCGGAATTCGGGAGCGatatattgttagaccgcctgctCCCGTTCAAGTTACAACAGTCGCTTCACATTCATTCATGAATTCCCCTGTGAGGCATTATGGGATAGTGTAGCGTCCATTGGATGAACACtacagaatctcgccagaagtacactacctgacaaaagtcatgtcgt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052764 lncRNA upstream 1192267 44000293 ~ 44053770 (+) False XLOC_025660
TCONS_00052765 lncRNA upstream 1196003 44000653 ~ 44050034 (+) False XLOC_025660
TCONS_00052766 lncRNA upstream 1196003 44000654 ~ 44050034 (+) True XLOC_025660
TCONS_00050505 lncRNA upstream 1490194 43711067 ~ 43755843 (+) False XLOC_025654
TCONS_00052762 lncRNA upstream 1490194 43711869 ~ 43755843 (+) False XLOC_025654
TCONS_00050520 lncRNA downstream 111583 45365115 ~ 45372624 (+) False XLOC_025665
TCONS_00050521 lncRNA downstream 115410 45368942 ~ 45370246 (+) False XLOC_025665
TCONS_00050524 lncRNA downstream 348813 45602345 ~ 45606457 (+) False XLOC_025667
TCONS_00050525 lncRNA downstream 349300 45602832 ~ 45605218 (+) False XLOC_025667
TCONS_00050526 lncRNA downstream 349300 45602832 ~ 45606457 (+) False XLOC_025667
TCONS_00050516 mRNA upstream 245392 44947355 ~ 45000645 (+) True XLOC_025663
TCONS_00050514 mRNA upstream 1168347 44062592 ~ 44077690 (+) True XLOC_025661
TCONS_00050513 mRNA upstream 1169090 44062576 ~ 44076947 (+) False XLOC_025661
TCONS_00050512 mRNA upstream 1258751 43955864 ~ 43987286 (+) True XLOC_025659
TCONS_00050509 mRNA upstream 1415007 43825785 ~ 43831030 (+) False XLOC_025658
TCONS_00050517 mRNA downstream 111317 45364849 ~ 45372636 (+) False XLOC_025665
TCONS_00050518 mRNA downstream 111566 45365098 ~ 45373511 (+) False XLOC_025665
TCONS_00050519 mRNA downstream 111579 45365111 ~ 45373056 (+) False XLOC_025665
TCONS_00050522 mRNA downstream 115441 45368973 ~ 45372778 (+) True XLOC_025665
TCONS_00050523 mRNA downstream 147940 45401472 ~ 45539853 (+) True XLOC_025666
TCONS_00050515 other upstream 357884 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050507 other upstream 1529122 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050506 other upstream 1531254 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050499 other upstream 1861859 43373895 ~ 43384178 (+) False XLOC_025650
TCONS_00050475 other upstream 3745512 41500409 ~ 41500525 (+) True XLOC_025630
TCONS_00050528 other downstream 381545 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050561 other downstream 2206956 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050573 other downstream 3878809 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050578 other downstream 4816063 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050613 other downstream 7366526 52620058 ~ 52620175 (+) True XLOC_025746

Expression Profile

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