RNA id: TCONS_00050519


Basic Information

Item Value
RNA id TCONS_00050519
length 928
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_025665
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 45364849 ~ 45373511 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTGTTTTCTTTTTACCAGGAGGGAAACTTCGCTAGATTTTTGCATTGAGCTTGACGCGAATTCCCAGTTAAACAGCTGCTAATTCAGAGTACGGCACTCATCTTGGCTGAAAAGggGTTTGTAGCCGTACCAACAAAAAACCCTGATGGAACCATGAACTTAATGAACTGGGAGTGTGCCATACCAGGGAAAAAAGGGACACCGTGGGAGGGAGGCTTGTTCAAACTTCGGATGCTTTTCAAGGACGACTACCCTTCCTCTCCACCAAAGTGTAAATTTGAGCCTCCTTTATTCCATCCGAATGTATACCCGTCTGGTACCGTATGCTTGTCTATTTTAGAGGAGGACAAAGATTGGAGGCCTGCCATTACGATCAAGCAGatCTTGCTAGGAATCCAAGAGCTCCTAAATGAACCAAATATTCAGGATCCCGCACAGGCCGAGGCATACACGATTTACTGCCAAAACAGAGTGGAGTATGAAAAAAGGGTCCGAGCACAAGCCAAAAAGTTCTCTCCGTAAACCTCAAGATTTTCACACTGTAATGGAAATGGGTTTTTGACCAGGTCTCCTCACCccgtcacacacacatacacacacacacacactctctgtcccCACACCTTTTACAAATCATATCCACTTCATACTAATTTACTGCTGGGCTTAAAGAAATGAATGTGTCGTGCCATTGTTGATCCACTGATGCTCGTCCtgacaaatttattattattattattattattattaggggtttTAAAATTTGGCCTTTTGTATAATAGTATAATTTCCCTCCCCCCTCTTGTTTGCGCAAACCCACAACCAAGGAAGTTCACGCTAGATTTGTggcttatttcttattttattatagtttcatTTTGTGTGAGTGAGGTTATTTGGAAACAGTGCTaccttttccaaaaaaa

Function

GO:

id name namespace
GO:0036306 embryonic heart tube elongation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007049 cell cycle biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:0016925 protein sumoylation biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0061656 SUMO conjugating enzyme activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010607-1 Predicted to enable SUMO conjugating enzyme activity. Acts upstream of or within definitive hemopoiesis; embryonic heart tube elongation; and heart looping. Predicted to be active in nucleus. Orthologous to human UBE2I (ubiquitin conjugating enzyme E2 I).

Ensembl:

ensembl_id ENSDART00000156555

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052767 lncRNA upstream 111579 45246037 ~ 45253532 (+) True XLOC_025664
TCONS_00052764 lncRNA upstream 1311341 44000293 ~ 44053770 (+) False XLOC_025660
TCONS_00052765 lncRNA upstream 1315077 44000653 ~ 44050034 (+) False XLOC_025660
TCONS_00052766 lncRNA upstream 1315077 44000654 ~ 44050034 (+) True XLOC_025660
TCONS_00052763 lncRNA upstream 1609268 43743459 ~ 43755843 (+) True XLOC_025654
TCONS_00050524 lncRNA downstream 229289 45602345 ~ 45606457 (+) False XLOC_025667
TCONS_00050525 lncRNA downstream 229776 45602832 ~ 45605218 (+) False XLOC_025667
TCONS_00050526 lncRNA downstream 229776 45602832 ~ 45606457 (+) False XLOC_025667
TCONS_00050527 lncRNA downstream 230111 45603167 ~ 45604001 (+) True XLOC_025667
TCONS_00052369 lncRNA downstream 1171958 46545014 ~ 46545481 (+) True XLOC_025678
TCONS_00050516 mRNA upstream 364466 44947355 ~ 45000645 (+) True XLOC_025663
TCONS_00050514 mRNA upstream 1287421 44062592 ~ 44077690 (+) True XLOC_025661
TCONS_00050513 mRNA upstream 1288164 44062576 ~ 44076947 (+) False XLOC_025661
TCONS_00050512 mRNA upstream 1377825 43955864 ~ 43987286 (+) True XLOC_025659
TCONS_00050511 mRNA upstream 1538591 43826019 ~ 43826520 (+) True XLOC_025658
TCONS_00050523 mRNA downstream 28416 45401472 ~ 45539853 (+) True XLOC_025666
TCONS_00050529 mRNA downstream 314210 45687266 ~ 45717575 (+) True XLOC_025669
TCONS_00050530 mRNA downstream 383549 45756605 ~ 45770088 (+) False XLOC_025670
TCONS_00050531 mRNA downstream 385704 45758760 ~ 45770089 (+) True XLOC_025670
TCONS_00050532 mRNA downstream 405754 45778810 ~ 45813581 (+) False XLOC_025671
TCONS_00050515 other upstream 476958 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050507 other upstream 1648196 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050506 other upstream 1650328 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050499 other upstream 1980933 43373895 ~ 43384178 (+) False XLOC_025650
TCONS_00050475 other upstream 3864586 41500409 ~ 41500525 (+) True XLOC_025630
TCONS_00050528 other downstream 262021 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050561 other downstream 2087432 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050573 other downstream 3759285 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050578 other downstream 4696539 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050613 other downstream 7247002 52620058 ~ 52620175 (+) True XLOC_025746

Expression Profile

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