RNA id: TCONS_00050516


Basic Information

Item Value
RNA id TCONS_00050516
length 1149
RNA type mRNA
GC content 0.50
exon number 2
gene id XLOC_025663
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 44947355 ~ 45000645 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCATATAGGTTCCTGTCAAGCCGAGTCGTGCCATCCTCAAACAGATTAAGCAGgaggtttatttttatattcactaTCTCTTTGTCTTTCATGTATCTATGCTACAGCATCCTCTTCTGCTCCGGTACAATCATGCCTAACCAGAGATTGGAGGAGCAGCGCTGCGTCCATCTGAAGAACGTTGGGAGTAAAAAACTTTTACAAAAGTCACATTATTGCACTATATCAGCAAAGGCGAGAGTTATCTCGGATGAGACGAGGGCTGTGGGTCTCCTAAACCTTACAGGCAACCAAAGCAAACATACAGCCTTCCAGAAAACAGAGCTGGCAGATCACAAGCAGAGTAATAATAGTAATTCGCCAAAATATGGGAATAAGAAGTTGCCCAATGCACTTATAGTTGGGGTTAAGAAAGGAGGCACCAGGGCGGTTCTGGAGTTCATCCGGATTCATCCAGATGTTCGAGCTCTTGGGACTGAACCACATTTCTTTGATAGAAACTATGACAAAGGACTGGACTGGTACAGGGGGCTTATGCCAAGGACGCTGGACAGCCAAATCACAATGGAGAAAACCCCTAGTTACTTCGTGACCCGTGAGGCTCCGCGGCGCATCTCCAACATGTCTCGTGAAACCAAGTTAATCGTAGTGGTGCGCAATCCAGTCACGAGGGCCATCTCAGATTACACACAAACCCTCTCCAAAAAACCCGACATCCCTTCCTTCGAAGACCTGGCCTTCAAAAACCGCAGCCAGGGCATCGTGGACACGTCCTGGAATGCCATCCGCATCGGCATGTACATCCTACACCTGGAGAACTGGCTCCAGTACTTCCGGCTGTCCCAGATCCACTTTGTGAGCGGCGAGCGGCTCATCACGGATCCGGCCGGAGAGCTGGGCCGTGTGCAGGACTTTCTGGGCCTCAAGCGGATCATCACGGACAAGCACTTCTACTTCAACCGAACGAAGGGTTTCCCGTGCCTGAAGAAGCCAGAGAGCAGCAGTCAGCCGCGCTGCCTGGGCAAATCCAAGGGCAGGACTCACGTTCAGATCCAGCAGGACGTCATTGAGCAGCTCAGAGAGTTTTATAGGCCATTCAATGTCAAGTTTTATGAGATGGTGGGTCATGACTTTAGATGGGACTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008467 [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity molecular_function

KEGG:

id description
ko00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-070202-7 Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain and otic vesicle. Human ortholog(s) of this gene implicated in colon cancer; lung cancer; and pancreatic cancer. Orthologous to human HS3ST2 (heparan sulfate-glucosamine 3-sulfotransferase 2).

Ensembl:

ensembl_id ENSDART00000083040

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052764 lncRNA upstream 893585 44000293 ~ 44053770 (+) False XLOC_025660
TCONS_00052765 lncRNA upstream 897321 44000653 ~ 44050034 (+) False XLOC_025660
TCONS_00052766 lncRNA upstream 897321 44000654 ~ 44050034 (+) True XLOC_025660
TCONS_00050505 lncRNA upstream 1191512 43711067 ~ 43755843 (+) False XLOC_025654
TCONS_00052762 lncRNA upstream 1191512 43711869 ~ 43755843 (+) False XLOC_025654
TCONS_00052767 lncRNA downstream 245392 45246037 ~ 45253532 (+) True XLOC_025664
TCONS_00050520 lncRNA downstream 364470 45365115 ~ 45372624 (+) False XLOC_025665
TCONS_00050521 lncRNA downstream 368297 45368942 ~ 45370246 (+) False XLOC_025665
TCONS_00050524 lncRNA downstream 601700 45602345 ~ 45606457 (+) False XLOC_025667
TCONS_00050525 lncRNA downstream 602187 45602832 ~ 45605218 (+) False XLOC_025667
TCONS_00050514 mRNA upstream 869665 44062592 ~ 44077690 (+) True XLOC_025661
TCONS_00050513 mRNA upstream 870408 44062576 ~ 44076947 (+) False XLOC_025661
TCONS_00050512 mRNA upstream 960069 43955864 ~ 43987286 (+) True XLOC_025659
TCONS_00050509 mRNA upstream 1116325 43825785 ~ 43831030 (+) False XLOC_025658
TCONS_00050510 mRNA upstream 1117626 43826018 ~ 43829729 (+) False XLOC_025658
TCONS_00050517 mRNA downstream 364204 45364849 ~ 45372636 (+) False XLOC_025665
TCONS_00050518 mRNA downstream 364453 45365098 ~ 45373511 (+) False XLOC_025665
TCONS_00050519 mRNA downstream 364466 45365111 ~ 45373056 (+) False XLOC_025665
TCONS_00050522 mRNA downstream 368328 45368973 ~ 45372778 (+) True XLOC_025665
TCONS_00050523 mRNA downstream 400827 45401472 ~ 45539853 (+) True XLOC_025666
TCONS_00050515 other upstream 59202 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050507 other upstream 1230440 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050506 other upstream 1232572 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050499 other upstream 1563177 43373895 ~ 43384178 (+) False XLOC_025650
TCONS_00050475 other upstream 3446830 41500409 ~ 41500525 (+) True XLOC_025630
TCONS_00050528 other downstream 634432 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050561 other downstream 2459843 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050573 other downstream 4131696 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050578 other downstream 5068950 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050613 other downstream 7619413 52620058 ~ 52620175 (+) True XLOC_025746

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_01421301_01451701.mRNA True 2282 mRNA 0.41 3 CI01000046 1420512 ~ 1451931 (-)