XLOC_025752 (atp13a1)


Basic Information

Item Value
gene id XLOC_025752
gene name atp13a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52899801 ~ 52952026 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050621
GTGTGTCTGAAATTTTTCAGAAATCTGTGGAGTGGGCAGACAACAGGCCGGTGCAAAGCTGCCTTTTTACCACCCGCGCCTGCAAGGAGGAGGTGGAGAGTAGGAGGAAGAATGGATGAAGCTAAAAAGGGGGCAAATATGGCCGCAGACGGCGTTGATGGGCCGGCGGGGACGCGGACGCGCGCGCCGAGCGACGACCTGGTGAGAGCAGTGTCTCTCCACAGCCGCAGGCCACGCGTGCTGCACGGGACGGTCTTCCCGTTCCTCATCCTCTACCCGGCCTGTTTATATACGTGGTTTGGTGTTTACGGGGCAGCGGAGTACGTTGAGGCCGGACTGCTGGCTCTCGCAGCTCTCGGGATCGCGCACGTCCTGACGGTGCTTTCTGGATACTGGTCCGTGCACGCGCACTGCCTGCTCACCTGCTCGAAGGAGTCTGATCCAGCCAAAGCCACATTTGCAAAAGTTATACCAACACCCAATAATGGCTCAGCAGAATTAGTGCCTCTTCTGAGGGATAAGGATGAGGATGGAGCAGAAATCCTGTCCTTTGAGTTCCAGAAGATCTGTTATGTGTACGACGGCGAGGAGAAGAAGCAGTTTCTGCCGGTGGCGTTTCCCATCAGCTTTCCCATGAGCCATTTCCAGAACTGGAGAGGCTATCAGGAGGAGGTTCAGTTGCGGGCCGCGGAGAAGCGATATGGCACCAACCGTGCAGAAATGGTGGTGCCGGACTTCCTGGAGCTCTTCAAGGAGAGAGCCACAGCACCCTTCTTTGTCTTCCAGGTGTTTTGTGTTGGTCTGTGGTGTTTGGACGAGTACTGGTACTACAGTGTCTTCACGCTCTTTATGCTGGTGGCCTTTGAAGCGTCACTGGTGCAGCAGCAGATGAGGAACATGTCTGAAATCCGCAGAATGGGGAACAAGCCTTACATGATCCAGGTTTATCGAAACAGAAAATGGAGGCCTATATCCAGTGATGAGCTGGTGCCTGGAGACATCGTCTCAGTTGGACGTTCTCCTCAGGATAACCTGGTCCCATGTGACGTGCTGCTGCTGAGGGGCCGCTGCATTGTGGATGAAGCCATGCTTACAGGAGAGTCTGTGCCGCAGATGAAGGAACCTATAGAGGACCTGGACCCTAACAGGATCCTAGACCTGCAGACTGACTCCCGACTTCACATTATTTCAGGCGGCACCAAAGTGGTTCAGCACAGCCCACCACTGCGAGCCAGCGCAGGCCTAAAACCTGTAGACAACGGCTGTGTTGCTTATGTTTTAAGAACGGGCTTCTACACCTCTCAGGGCAAATTATTGAGAACGATTCTGTTTGGTGTGAAAAGGGTAACGGCCAACAACCTGGAGACTTTCATCTTCATTCTGTTCTTATTGGTTTTTGCCATTGCGGCTGCTGTGTATGTTTGGGTCGAAGGGACAAAGGATCCAAGCAGAAACAAGTATAAGCTGTTTCTGGAGTGCACGCTGATCCTGACGTCAGTGGTTCCTCCTGAATTACCCATAGAACTTTCGCTGGCTGTTAACACATCTCTCATAGCCCTGGCCAAACTCTATGTGTTTTGCACAGAACCTTTCAGGATCCCCTTTGCTGGGAAAGTGGAGATCTGCTGCTTCGACAAGACCGGCACTCTGACCAGCGACAGCTTGGTGGTCCGTGGAGTCGCAGGGCTCAGAGAGGGGAAACAAGTGATGCCAGTATCAGAGATTCCAGTGGACACTCATCGGGTGGTGGCCACATGTCATTCGCTGGTCACTCTAGATGATGGTCAGCTGGTGGGGGATCCCCTGGAGAAGGCTATGCTGACCGCAGCAGACTGGACGCTCACTAAAGatgAGAAGGTGTTTGCTCGCAGCATAAAGACTCCAGGGCTGAAGATCCATCAGAGGTTTCACTTCACCAGCGCTCTGAAGAGGATGTCTGTGCTGGCGTCATATGAGCGCATGGGCTCCACCGAGCTCTGCTACATCTCTACTGTGAAAGGAGCCCCGGAGACCCTCAGAAACATGTTCTCGGAGTGTCCGGCCAGCTATGACGAGGTGCACAGAGAGATGTCCCGCGAGGGAGCCCGAGTGCTGGCGCTGGGATATAAAGAGATGGGCCACCTGAGCCATCAGCAGgTGAGAGAGGTGAGCCGTGAGCAGCTGGAGTGTGACCTGCGCTTTGCTGGATTCATGGTCGTGTCTTGTCCTCTCAAGTCAGACAGCAAAGCAGTGATCAGAGAAATACAAGAGGCATCACACCATGTTGTAATGATCACAGGTGACAACCCTCTAACAGCGTGTCACGTGGCCAGAGAACTGCATTTCATCCAGAAAGAGCACACATTGATCCTGCAGCAGAGCTCCAGTCAAGcTGAATGGCAGTGGGTGTCTATCGACGGCAGTGtgtctcttcctcttcctccatcTTCAGTGTCAGAACTGATTCAGCGGTACGACCTCTGTGTGACCGGAGAGGGACTGGCCAGGCTGAAGTTTGACCCGCAGCTGCTCAGCGCTTTGCTTCCTCACGTGCGCGTCTTTGCTCGTGTCAGCCCTAAACAGAAGgagttTGTCATAACTAGTCTGAAGGGACTGGGTTTTGTTACGCTGATGTGTGGTGACGGCACAAATGACGTTGGCGCACTCAAACATGCACACATAGGCGTGGCCTTGTTAGCGAATGCTCCTGAGCGGATGCCTGAGAAGAAGAAAAGGAACAAAGAGAAAGAGTATTCATCTGGAGAGTCCAGACCTGGACCCCCTGTCCCAACCTCAGGAGGCAAACTGAGCTCCCGCGCAGCCAGACAGAGACTCATGGCCCAGAGAGAGGAGCAGCTTGCTGCACAGAAGGAGAGGATCAGTCAGGTGCTGCGGGAGTTAGAAGAGGACCAAATTCAGGTGGTCAAACTGGGTGATGCCTCCATTGCTGCTCCGTTCACCTCCAAACTGTCCTCCATACAGTGCAtCTGTCACGTGATCAAGCAGGGCCGCTGTACTCTGGTCACCACACTGCAGATGTTCAAGATCCTGGCGCTGAACGCTCTGATTCTGGCCTACAGTCAGTCCGTGCTTTACCTAGAGGGCGTCAAATTCAGTGACTTCCAGGCCACTCTTCAGGGCCTGCTGCTGGCCGGCTGCTTCCTCTTCATCTCGCGCTCAAAGCCTTTGAAGTCTTTGTCTAAGGAGCGGCCTTTACCAAACATTTTCAACCTGTACACGGTCCTCACTGTGCTGCTGCAGTTTGCGGTGCACTTCTGCAGTCTGGTGTACCTCTACAAGGGAGCGCAGACCAGAAGCCCACCCAGGTCAGAGCAGTTTGTGGACCTGTACAAAGAGTTTGAGCCCAGCCTCATCAACAGTACTGTATACATCATGTCCATGGCCATGCAGATGGCCACCTTTGCCATTAATTATAAGGGTCATCCGTTCATGGAGTCTCTCACTGAGAATCGGCCCTTGCTGTGGAGCATCGCTATATCAGGTCTCGCCATAGTTGGACTGTTGACAGGATCTTCACCTGAGTTCAACGAGCAGTTTGCCTTAGTGGACATTCCAACTGAGTTTAAGTTAATAATAGCCCAGGTCCTTGTTGTGGATTTTGTCGCCGCCCTGCTGGTGGACCGAGTGTTGCAGTTCCTGCTGGGCAAAGGAACCCTGCGGTTGCCGAAATGAACTGTTTTTTGCCGACAGTCACCAGAGCAGCTGCTGCCCCTCGTGACCAGACTGTGAACGGGCTTTACAGGAACACGGTTCTGGACCGCTGGCACACACGGACGGGCGTGAAACTCAATACTGTACACACCCCAGTGTTCCCTCTCTCTTCCCAGTCTCTGTCTGCGCTCTCTTTTAATACTCTCACTTCATTTTCTGTCTACTGACGTCTTTAACCACCCCTCCGCTCTGACGGCCAACAAAACGACAGTATTGTGCTGAGgtgcgagtgtgtgtgcgtgtgtgtgtagtgCGGGTGAAGCACACGGCTGTGACGGGGCATTCTGAagaagtgtttcttttttttgcttttgttttcatcATTTTGTAAAAAGACGATTCTCAGAGAGACTTATAAATGACCATAAAACA

Function

symbol description
atp13a1 Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and metal ion binding activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to act upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP13A1 (ATPase 13A1).

GO:

id name namespace
GO:0006812 cation transport biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2804 Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and metal ion binding activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to act upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP13A1 (ATPase 13A1).

Ensembl:

ensembl_id ENSDARG00000029931

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050621 True 4083 mRNA 0.53 25 52899801 52952026

Neighbor

gene id symbol gene type direction distance location
XLOC_025750 NA coding upstream 16377 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 coding upstream 70795 52828912 ~ 52829006 (+)
XLOC_025749 gmip coding upstream 98499 52737565 ~ 52801302 (+)
XLOC_025748 colgalt1 coding upstream 167767 52702700 ~ 52732034 (+)
XLOC_025747 pgls coding upstream 199191 52684556 ~ 52700610 (+)
XLOC_025753 dsn1 coding downstream 1463 52953489 ~ 52980049 (+)
XLOC_025754 pbx4 coding downstream 47936 52999962 ~ 53076469 (+)
XLOC_025755 brd4 coding downstream 164146 53116172 ~ 53224280 (+)
XLOC_025756 pet100 coding downstream 276658 53228684 ~ 53231344 (+)
XLOC_025757 stxbp2 coding downstream 288536 53240562 ~ 53274285 (+)
XLOC_025429 BX649540.1 misc upstream 22650765 30248739 ~ 30249036 (+)
XLOC_025746 BX511096.1 non-coding upstream 279626 52620058 ~ 52620175 (+)
XLOC_025739 NA non-coding upstream 507596 52390252 ~ 52392205 (+)
XLOC_025738 NA non-coding upstream 510762 52377578 ~ 52389039 (+)
XLOC_025761 NA non-coding downstream 574939 53526965 ~ 53652401 (+)
XLOC_025764 CU633748.1 non-coding downstream 1115497 54067523 ~ 54067639 (+)
XLOC_025765 NA non-coding downstream 1159363 54111389 ~ 54111972 (+)
XLOC_025766 NA non-coding downstream 1318677 54270703 ~ 54271345 (+)
XLOC_025767 NA non-coding downstream 1331741 54283767 ~ 54284185 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_01404787_01423732 ATP13A1 coding CI01000113 null 1404666 ~ 1423732 (-)
bowfin (Amia calva) AMCG00008418 atp13a1 coding CM030126.1 CM030126.1 785426 ~ 799063 (+)