XLOC_025749 (gmip)


Basic Information

Item Value
gene id XLOC_025749
gene name gmip
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52737565 ~ 52801302 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050616
GGTGAAAGAGCATTGGCCAACCCAGCCTCCGCTTTAGAGGAAGAGAAGTGCTGCATGCGAGAGAACTGAAGAGAAGGGCACACGGTCTCCATGTCCTCTCTTAATGTCTGATGAAAGGTGATGCTTCTGCCCGGATCTTTTTGGGCTGGGGTGGACGGACAGAGTACTGGATGACCACACAGCCTGCTGTGAGAGGCTAAGAGGACCAGATGGAGGAGACTGTGGAGACTGCACAGCTGAGGCAGCCCAAAGATGGGGATATTCCAGTCCGGCACTCGGAAACCAAGCGTTACAGTGAGATATTACGCGATTTTGATGCTTTGGATCTGTCCCTAAAATGCTCGACTGTGGATGAGCTCCTGCAAGAAGCAGATTCACTGTCTTTACCAGACACTTCAGCAGACACCACGCTGAACGCTGATCTGGACGATATTACAGGTGAAGATGTGGAAGATGAAGTGAAGATCTGCCGTGAAGAGGAGGAAAAAGACGAAGGCACTCTTTCGATCGCCCAGGATGCTGACCTGAGCCTCTGCCACTGCGAGGATGGCGTGGAGCTTGCCCTGCAGTACGCCAAAATGTGGTGCCGCTACGCCAAAGACCTGCTCACCTGGATGGACAAGAGAATCAGCCTAGagCAAGAGTTTGCAAAAAGTATTATGAGAGCGGCAGATGCAGCCAAGTCATGTGTTGCTCAACAGGATATGATGCCTCTACAGAATATCTACACACAGGCGCTGGAGCATGATCTCAAGACCAGCGCATCAGCCAAACAAAGCGCTGAAAACATACAACAGCGCTGCTACCAGGCCCTGTCAGCCAAGAGGAACGAGATCGACAAGTGGAGGAGGGAATTCAAAGAGCAGTGGTCAAAGGAGCAGAAGAGGATGCATGATGCGGTGTCAGCGCTGAAGAGAGCCCGGCAGCAGTATATGCAGCGCTGTGAGGAGCTGGAGAAGGCCAAAGCCATGACTGCCAAAGCTGAAGAGGACACTGGCGGTTATAAGACGCTGGACAAGAGGAGGAAGTCCAGAGATGATGCACAGACCAAGGTTACAGAAACTGAGATGCAGTACAGACAGTGTGTGAGTGAAGCAAACAACCATCAGAAAGAGCTGGACAAAGTGAAGCGCAAGATCATCGTCCACATACGCAAGCTCATCTGTCAAGGAGACACTGTGCTGAAAGAGGCGACAATGAAAATGTTCAATTTCCAGCGGCAGCAGACTGAGCCGGTTCCCCTGGCCTACCAAAATCTGCAGTTGACCTGCGCACCCTGTGAGCCAGGTGAACCTTACCTGCACTACATCCTGGGCAAACGCCTGCCTGACCAGCCTCCCCAGATCTACATCTTTCAGGAGTTCATTCCCCAAAACAGGAGATCCCCACCAACAGGTCGACGTAAACAGAGCAATATCCAACAAGATTTATACGCACTGCCAGATGATCTAAAACACAGCAGCAGTTTAGTAGATGGACGACGACCCGGCCAGAGCGACAGAGACAGCACTGGAAGTCTCGAATCGCTGTCCAGCCCAGCTCATGGGACCCGTAAGCTGCCCAAGGCCTCCTCCACAGGAACCATGTCTTCAGATGATCTGGATGAGAAAGATCCAGAAGAGAGTGAAGAGGGTTTGTCTGACAGCAATGGCATGACATGCAAACCCCGATCTGCGTCACGTGCCGCCTTAACCCACAGACTGAGAAAAATGAAGAGCAAGATGGTCAAGTGTAAGCAGTGTGACAACTACATCCTGGTCAACGGGATTGAATGTGAGGAGTGCGGTCTCGCAGTCCACAGGAAGTGCCTGGAGGTTTGCCAGCTGGAGTGTGAGCACAGGAGAGGGTTCGTTTTTGGCACTGAGTTCTCTTCACTGCCCAGAGAAACGCAAGACTCTGTGCCCTTTGTGGTCCTGCGCTGCACTGAAGAGATTGAGAACAGGGCTCTTGGAGTACAGGGAGTGTACCGAATCAGTGGATCCAAACCTCGCGTTTTGAAATTATGTCAGGCCTTTGAAATCCAGAAGGACCAAGTTGACCTTAGTGACCTTTCACCACACGACATCACCTCTGTACTCAAGCACTTCTTCAAGGAgctgcCAGAGCCACTGCTCACCTTTGACCTTTACAATGACTTCATTGCTGTGGGTAAGGAGATTCAGAGGCTCAGCGAAAAGGACCACGCCGCTGAGTCTCCTGGGATTGTGGAGAATATAGTGCGCAGGCTCAGAGAGCTCATTGGCCGATTGCCTGTGTGCAACAACATCACAGTGCAGCACATGATGGCCCACTTGAACAGGGTGGCCGAACAATTCGAGGACAACAAGATGTCTCCAGGAAACCTGGGTATTGTATTTGGGCCGACGCTCCTGCGGCCCCTAGTATCTGGAGATGTATCTATGATCGCGCTTCTGGAAACCAGCTATCAAGCCCTCCTGGTGGAGTTCATGATCTCCAACTATGACCAAGTATTCGGTTCCGCCACGAGATCCGGCACACCTCCGCCACCTCCACCCACAGCACCGCTCCCAGAAACTCCACCCAGAGCAACCTGTCCTGTTTCTCCATCCAGCAGCTCCTCTCAGGACCCCACAGCCACGTCTAGAGAACGTCCGCGCTCACTGGAGTCCTGGCTATGAGTGCCACGGCATCTCCTCAAGGGCTTCCGGGACAGGCTGCAGAAAATCAACTACAAACTCGCTCCAGGACTCACCTCAGCAGGCAGCCGGTCAAGTACTACAGACAGGGTTCAGCAGGAGCGCAGTCACGGAAAACAAGCGCTCAGTTGAGGGACGAGAACATTTCTGTGAGCGGAGAAGGACTCGTATCTGGAAGTGCAGATAGTAGTCGCAGCTCTTCTCCTGAGCCCTTAAAAACTCTCCTCTGCCTACAGGAGACCGTAGTCCCACAGGATAAGACAGAGAGTCAGACTGGAGCTCATGCAGGGGTGCAGAGGACAGTTTCACAGGAGTCCGTTCAAGCAGGAGCGTCTTCATTTGTCAGAGAAGGTAACACAAACCAGTCCAACAACACCCTACGGGGCAGAGAGCGCCTGATTCGCTCCTTGAGGAGGCGCTCTGTTGAAGAGAAAACGTCCCAGAAGGTGCTGTCTGGACTTAGGCTGAATTCAGGGAAGGGCGAGCAGCTTCATTTCGTTTGACACTGACTGAAACAGAGCTAACTTGTTTACTTGGGATTCGCCGGATTAAATCCCGATTTGTAAAGCAACAGTATTTTAGCATGTGCCGTACATTTTTAAGTCTTCCTGCTTTGTGGCCCATGAAGAATCGATAACTCATTTTAAAAGTCACCTTGTGTTAAATGATTGACTTTTACCATTTATGAATCCATGCAGC
>TCONS_00050617
GACTGTGGATGAGCTCCTGCAAGAAGCAGATTCACTGTCTTTACCAGACACTTCAGCAGACACCACGCTGAACGCTGATCTGGACGATATTACAGTGAGACATGATTGATGAATTACTTCTCTTATTCACCCATTTCTTAGTAGCTTTGTGTGTCTCAAGAAAGAAAACTCTGTGTGCCACTGGGAATATTAAAAGCTGCTTGTTTTCCAGGGTGAAGATGTGGAAGATGAAGTGAAGATCTGCCGTGAAGAGGAGGAAAAAGACGAAGGCACTCTTTCGATCGCCCAGGATGCTGACCTGAGCCTCTGCCACTGCGAGGATGGCGTGGAGCTTGCCCTGCAGTACGCCAAAATGTGGTGCCGCTACGCCAAAGACCTGCTCACCTGGATGGACAAGAGAATCAGCCTAGagCAAGAGTTTGCAAAAAGTATTATGAGAGCGGCAGATGCAGCCAAGTCATGTGTTGCTCAACAGGATATGATGCCTCTACAGAATATCTACACACAGGCGCTGGAGCATGATCTCAAGACCAGCGCATCAGCCAAACAAAGCGCTGAAAACATACAACAGCGCTGCTACCAGGCCCTGTCAGCCAAGAGGAACGAGATCGACAAGTGGAGGAGGGAATTCAAAGAGCAGTGGTCAAAGGAGCAGAAGAGGATGCATGATGCGGTGTCAGCGCTGAAGAGAGCCCGGCAGCAGTATATGCAGCGCTGTGAGGAGCTGGAGAAGGCCAAAGCCATGACTGCCAAAGCTGAAGAGGACACTGGCGGTTATAAGACGCTGGACAAGAGGAGGAAGTCCAGAGATGATGCACAGACCAAGGTTACAGAAACTGAGATGCAGTACAGACAGTGTGTGAGTGAAGCAAACAACCATCAGAAAGAGCTGGACAAAGTGAAGCGCAAGATCATCGTCCACATACGCAAGCTCATCTGTCAAGGAGACACTGTGCTGAAAGAGGCGACAATGAAAATGTTCAATTTCCAGCGGCAGCAGACTGAGCCGGTTCCCCTGGCCTACCAAAATCTGCAGTTGACCTGCGCACCCTGTGAGCCAGGTGAACCTTACCTGCACTACATCCTGGGCAAACGCCTGCCTGACCAGCCTCCCCAGATCTACATCTTTCAGGAGTTCATTCCCCAAAACAGGAGATCCCCACCAACAGGTCGACGTAAACAGAGCAATATCCAACAAGATTTATACGCACTGCCAGATGATCTAAAACACAGCAGCAGTTTAGTAGATGGACGACGACCCGGCCAGAGCGACAGAGACAGCACTGGAAGTCTCGAATCGCTGTCCAGCCCAGCTCATGGGACCCGTAAGCTGCCCAAGGCCTCCTCCACAGGAACCATGTCTTCAGATGATCTGGATGAGAAAGATCCAGAAGAGAGTGAAGAGGGTTTGTCTGACAGCAATGGCATGACATGCAAACCCCGATCTGCGTCACGTGCCGCCTTAACCCACAGACTGAGAAAAATGAAGAGCAAGATGGTCAAGTGTAAGCAGTGTGACAACTACATCCTGGTCAACGGGATTGAATGTGAGGAGTGCGGTCTCGCAGTCCACAGGAAGTGCCTGGAGGTTTGCCAGCTGGAGTGTGAGCACAGGAGAGGGTTCGTTTTTGGCACTGAGTTCTCTTCACTGCCCAGAGAAACGCAAGACTCTGTGCCCTTTGTGGTCCTGCGCTGCACTGAAGAGATTGAGAACAGGGCTCTTGGAGTACAGGGAGTGTACCGAATCAGTGGATCCAAACCTCGCGTTTTGAAATTATGTCAGGCCTTTGAAATCCAGAAGGACCAAGTTGACCTTAGTGACCTTTCACCACACGACATCACCTCTGTACTCAAGCACTTCTTCAAGGAgctgcCAGAGCCACTGCTCACCTTTGACCTTTACAATGACTTCATTGCTGTGGGTAAGGAGATTCAGAGGCTCAGCGAAAAGGACCACGCCGCTGAGTCTCCTGGGATTGTGGAGAATATAGTGCGCAGGCTCAGAGAGCTCATTGGCCGATTGCCTGTGTGCAACAACATCACAGTGCAGCACATGATGGCCCACTTGAACAGGGTGGCCGAACAATTCGAGGACAACAAGATGTCTCCAGGAAACCTGGGTATTGTATTTGGGCCGACGCTCCTGCGGCCCCTAGTATCTGGAGATGTATCTATGATCGCGCTTCTGGAAACCAGCTATCAAGCCCTCCTGGTGGAGTTCATGATCTCCAACTATGACCAAGTATTCGGTTCCGCCACGAGATCCGGCACACCTCCGCCACCTCCACCCACAGCACCGCTCCCAGAAACTCCACCCAGAGCAACCTGTCCTGTTTCTCCATCCAGCAGCTCCTCTCAGGACCCCACAGCCACGTCTAGAGAACGTCCGCGCTCACTGGAGAATCGCACTATCAAGAGAGATTCAAGCGAAGGTTATATTTCTGACAAGTCCTCATCCAATGAAGCAATGGACCAGCTGAGCCCAgaagccaatgagagagcagTCCTGGCTATGAGTGCCACGGCATCTCCTCAAGGGCTTCCGGGACAGGCTGCAGAAAATCAACTACAAACTCGCTCCAGGACTCACCTCAGCAGGCAGCCGGTCAAGTACTACAGACAGGGTTCAGCAGGAGCGCAGTCACGGAAAACAAGCGCTCAGTTGAGGGACGAGAACATTTCTGTGAGCGGAGAAGGACTCGTATCTGGAAGTGCAGATAGTAGTCGCAGCTCTTCTCCTGAGCCCTTAAAAACTCTCCTCTGCCTACAGGAGACCGTAGTCCCACAGGATAAGACAGAGAGTCAGACTGGAGCTCATGCAGGGGTGCAGAGGACAGTTTCACAGGAGTCCGTTCAAGCAGGAGCGTCTTCATTTGTCAGAGAAGGTAACACAAACCAGTCCAACAACACCCTACGGGGCAGAGAGCGCCTGATTCGCTCCTTGAGGAGGCGCTCTGTTGAAGAGAAAACGTCCCAGAAGGTGCTGTCTGGACTTAGGCTGAATTCAGGGAAGGGCGAGCAGCTTCATTTCGTTTGA

Function

symbol description
gmip Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and negative regulation of GTPase activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in plasma membrane. Orthologous to human GMIP (GEM interacting protein).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0034260 negative regulation of GTPase activity biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-130530-823 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and negative regulation of GTPase activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in plasma membrane. Orthologous to human GMIP (GEM interacting protein).

Ensembl:

ensembl_id ENSDARG00000077249

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050616 False 3356 mRNA 0.52 20 52737565 52801302
TCONS_00050617 True 3037 mRNA 0.52 18 52753416 52801106

Neighbor

gene id symbol gene type direction distance location
XLOC_025748 colgalt1 coding upstream 5531 52702700 ~ 52732034 (+)
XLOC_025747 pgls coding upstream 36955 52684556 ~ 52700610 (+)
XLOC_025746 BX511096.1 coding upstream 117390 52620058 ~ 52620175 (+)
XLOC_025745 slc27a1a coding upstream 133882 52545014 ~ 52603683 (+)
XLOC_025744 ptger1c coding upstream 197902 52528606 ~ 52539663 (+)
XLOC_025750 NA coding downstream 4970 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 coding downstream 27610 52828912 ~ 52829006 (+)
XLOC_025752 atp13a1 coding downstream 98499 52899801 ~ 52952026 (+)
XLOC_025753 dsn1 coding downstream 152187 52953489 ~ 52980049 (+)
XLOC_025754 pbx4 coding downstream 198660 52999962 ~ 53076469 (+)
XLOC_025429 BX649540.1 misc upstream 22488529 30248739 ~ 30249036 (+)
XLOC_025739 NA non-coding upstream 345360 52390252 ~ 52392205 (+)
XLOC_025738 NA non-coding upstream 348526 52377578 ~ 52389039 (+)
XLOC_025737 BX511132.1 non-coding upstream 358093 52367302 ~ 52379472 (+)
XLOC_025735 NA non-coding upstream 473419 52224103 ~ 52264146 (+)
XLOC_025761 NA non-coding downstream 725663 53526965 ~ 53652401 (+)
XLOC_025764 CU633748.1 non-coding downstream 1266221 54067523 ~ 54067639 (+)
XLOC_025765 NA non-coding downstream 1310087 54111389 ~ 54111972 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_01458405_01476967 GMIP coding CI01000113 null 1458405 ~ 1476967 (-)