RNA id: TCONS_00050616


Basic Information

Item Value
RNA id TCONS_00050616
length 3356
RNA type mRNA
GC content 0.52
exon number 20
gene id XLOC_025749
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52737565 ~ 52801302 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGAAAGAGCATTGGCCAACCCAGCCTCCGCTTTAGAGGAAGAGAAGTGCTGCATGCGAGAGAACTGAAGAGAAGGGCACACGGTCTCCATGTCCTCTCTTAATGTCTGATGAAAGGTGATGCTTCTGCCCGGATCTTTTTGGGCTGGGGTGGACGGACAGAGTACTGGATGACCACACAGCCTGCTGTGAGAGGCTAAGAGGACCAGATGGAGGAGACTGTGGAGACTGCACAGCTGAGGCAGCCCAAAGATGGGGATATTCCAGTCCGGCACTCGGAAACCAAGCGTTACAGTGAGATATTACGCGATTTTGATGCTTTGGATCTGTCCCTAAAATGCTCGACTGTGGATGAGCTCCTGCAAGAAGCAGATTCACTGTCTTTACCAGACACTTCAGCAGACACCACGCTGAACGCTGATCTGGACGATATTACAGGTGAAGATGTGGAAGATGAAGTGAAGATCTGCCGTGAAGAGGAGGAAAAAGACGAAGGCACTCTTTCGATCGCCCAGGATGCTGACCTGAGCCTCTGCCACTGCGAGGATGGCGTGGAGCTTGCCCTGCAGTACGCCAAAATGTGGTGCCGCTACGCCAAAGACCTGCTCACCTGGATGGACAAGAGAATCAGCCTAGagCAAGAGTTTGCAAAAAGTATTATGAGAGCGGCAGATGCAGCCAAGTCATGTGTTGCTCAACAGGATATGATGCCTCTACAGAATATCTACACACAGGCGCTGGAGCATGATCTCAAGACCAGCGCATCAGCCAAACAAAGCGCTGAAAACATACAACAGCGCTGCTACCAGGCCCTGTCAGCCAAGAGGAACGAGATCGACAAGTGGAGGAGGGAATTCAAAGAGCAGTGGTCAAAGGAGCAGAAGAGGATGCATGATGCGGTGTCAGCGCTGAAGAGAGCCCGGCAGCAGTATATGCAGCGCTGTGAGGAGCTGGAGAAGGCCAAAGCCATGACTGCCAAAGCTGAAGAGGACACTGGCGGTTATAAGACGCTGGACAAGAGGAGGAAGTCCAGAGATGATGCACAGACCAAGGTTACAGAAACTGAGATGCAGTACAGACAGTGTGTGAGTGAAGCAAACAACCATCAGAAAGAGCTGGACAAAGTGAAGCGCAAGATCATCGTCCACATACGCAAGCTCATCTGTCAAGGAGACACTGTGCTGAAAGAGGCGACAATGAAAATGTTCAATTTCCAGCGGCAGCAGACTGAGCCGGTTCCCCTGGCCTACCAAAATCTGCAGTTGACCTGCGCACCCTGTGAGCCAGGTGAACCTTACCTGCACTACATCCTGGGCAAACGCCTGCCTGACCAGCCTCCCCAGATCTACATCTTTCAGGAGTTCATTCCCCAAAACAGGAGATCCCCACCAACAGGTCGACGTAAACAGAGCAATATCCAACAAGATTTATACGCACTGCCAGATGATCTAAAACACAGCAGCAGTTTAGTAGATGGACGACGACCCGGCCAGAGCGACAGAGACAGCACTGGAAGTCTCGAATCGCTGTCCAGCCCAGCTCATGGGACCCGTAAGCTGCCCAAGGCCTCCTCCACAGGAACCATGTCTTCAGATGATCTGGATGAGAAAGATCCAGAAGAGAGTGAAGAGGGTTTGTCTGACAGCAATGGCATGACATGCAAACCCCGATCTGCGTCACGTGCCGCCTTAACCCACAGACTGAGAAAAATGAAGAGCAAGATGGTCAAGTGTAAGCAGTGTGACAACTACATCCTGGTCAACGGGATTGAATGTGAGGAGTGCGGTCTCGCAGTCCACAGGAAGTGCCTGGAGGTTTGCCAGCTGGAGTGTGAGCACAGGAGAGGGTTCGTTTTTGGCACTGAGTTCTCTTCACTGCCCAGAGAAACGCAAGACTCTGTGCCCTTTGTGGTCCTGCGCTGCACTGAAGAGATTGAGAACAGGGCTCTTGGAGTACAGGGAGTGTACCGAATCAGTGGATCCAAACCTCGCGTTTTGAAATTATGTCAGGCCTTTGAAATCCAGAAGGACCAAGTTGACCTTAGTGACCTTTCACCACACGACATCACCTCTGTACTCAAGCACTTCTTCAAGGAgctgcCAGAGCCACTGCTCACCTTTGACCTTTACAATGACTTCATTGCTGTGGGTAAGGAGATTCAGAGGCTCAGCGAAAAGGACCACGCCGCTGAGTCTCCTGGGATTGTGGAGAATATAGTGCGCAGGCTCAGAGAGCTCATTGGCCGATTGCCTGTGTGCAACAACATCACAGTGCAGCACATGATGGCCCACTTGAACAGGGTGGCCGAACAATTCGAGGACAACAAGATGTCTCCAGGAAACCTGGGTATTGTATTTGGGCCGACGCTCCTGCGGCCCCTAGTATCTGGAGATGTATCTATGATCGCGCTTCTGGAAACCAGCTATCAAGCCCTCCTGGTGGAGTTCATGATCTCCAACTATGACCAAGTATTCGGTTCCGCCACGAGATCCGGCACACCTCCGCCACCTCCACCCACAGCACCGCTCCCAGAAACTCCACCCAGAGCAACCTGTCCTGTTTCTCCATCCAGCAGCTCCTCTCAGGACCCCACAGCCACGTCTAGAGAACGTCCGCGCTCACTGGAGTCCTGGCTATGAGTGCCACGGCATCTCCTCAAGGGCTTCCGGGACAGGCTGCAGAAAATCAACTACAAACTCGCTCCAGGACTCACCTCAGCAGGCAGCCGGTCAAGTACTACAGACAGGGTTCAGCAGGAGCGCAGTCACGGAAAACAAGCGCTCAGTTGAGGGACGAGAACATTTCTGTGAGCGGAGAAGGACTCGTATCTGGAAGTGCAGATAGTAGTCGCAGCTCTTCTCCTGAGCCCTTAAAAACTCTCCTCTGCCTACAGGAGACCGTAGTCCCACAGGATAAGACAGAGAGTCAGACTGGAGCTCATGCAGGGGTGCAGAGGACAGTTTCACAGGAGTCCGTTCAAGCAGGAGCGTCTTCATTTGTCAGAGAAGGTAACACAAACCAGTCCAACAACACCCTACGGGGCAGAGAGCGCCTGATTCGCTCCTTGAGGAGGCGCTCTGTTGAAGAGAAAACGTCCCAGAAGGTGCTGTCTGGACTTAGGCTGAATTCAGGGAAGGGCGAGCAGCTTCATTTCGTTTGACACTGACTGAAACAGAGCTAACTTGTTTACTTGGGATTCGCCGGATTAAATCCCGATTTGTAAAGCAACAGTATTTTAGCATGTGCCGTACATTTTTAAGTCTTCCTGCTTTGTGGCCCATGAAGAATCGATAACTCATTTTAAAAGTCACCTTGTGTTAAATGATTGACTTTTACCATTTATGAATCCATGCAGC

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0034260 negative regulation of GTPase activity biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-130530-823 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and negative regulation of GTPase activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in plasma membrane. Orthologous to human GMIP (GEM interacting protein).

Ensembl:

ensembl_id ENSDART00000108639

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052379 lncRNA upstream 345360 52390252 ~ 52392205 (+) True XLOC_025739
TCONS_00052798 lncRNA upstream 348526 52377578 ~ 52389039 (+) True XLOC_025738
TCONS_00050604 lncRNA upstream 358093 52367302 ~ 52379472 (+) True XLOC_025737
TCONS_00052797 lncRNA upstream 473419 52224103 ~ 52264146 (+) False XLOC_025735
TCONS_00052380 lncRNA downstream 4970 52806272 ~ 52809710 (+) False XLOC_025750
TCONS_00052799 lncRNA downstream 725663 53526965 ~ 53652401 (+) False XLOC_025761
TCONS_00052381 lncRNA downstream 804864 53606166 ~ 53632347 (+) False XLOC_025761
TCONS_00052382 lncRNA downstream 830816 53632118 ~ 53649626 (+) True XLOC_025761
TCONS_00052383 lncRNA downstream 1310087 54111389 ~ 54111972 (+) True XLOC_025765
TCONS_00050615 mRNA upstream 5531 52702700 ~ 52732034 (+) True XLOC_025748
TCONS_00050614 mRNA upstream 36955 52684556 ~ 52700610 (+) True XLOC_025747
TCONS_00050611 mRNA upstream 133882 52545014 ~ 52603683 (+) False XLOC_025745
TCONS_00050612 mRNA upstream 134597 52545400 ~ 52602968 (+) True XLOC_025745
TCONS_00050610 mRNA upstream 197902 52528606 ~ 52539663 (+) True XLOC_025744
TCONS_00050618 mRNA downstream 5045 52806347 ~ 52883424 (+) False XLOC_025750
TCONS_00050619 mRNA downstream 5139 52806441 ~ 52883423 (+) True XLOC_025750
TCONS_00050621 mRNA downstream 98499 52899801 ~ 52952026 (+) True XLOC_025752
TCONS_00050622 mRNA downstream 152187 52953489 ~ 52980049 (+) True XLOC_025753
TCONS_00050623 mRNA downstream 198660 52999962 ~ 53076469 (+) False XLOC_025754
TCONS_00050613 other upstream 117390 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 2662375 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 3605088 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 5276962 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 7102379 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050620 other downstream 27610 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 1266221 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 2497741 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 2682211 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 4835072 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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