Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050619 |
| length | 1221 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 9 |
| gene id | XLOC_025750 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 52806272 ~ 52883424 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030426 | growth cone | cellular_component |
| GO:0030427 | site of polarized growth | cellular_component |
| GO:0150034 | distal axon | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-131213-1 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in diencephalon; epiphysis; hindbrain; midline column; and superior raphe nucleus. |
| ensembl_id | ENSDART00000098826 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052379 | lncRNA | upstream | 414236 | 52390252 ~ 52392205 (+) | True | XLOC_025739 |
| TCONS_00052798 | lncRNA | upstream | 417402 | 52377578 ~ 52389039 (+) | True | XLOC_025738 |
| TCONS_00050604 | lncRNA | upstream | 426969 | 52367302 ~ 52379472 (+) | True | XLOC_025737 |
| TCONS_00052797 | lncRNA | upstream | 542295 | 52224103 ~ 52264146 (+) | False | XLOC_025735 |
| TCONS_00052799 | lncRNA | downstream | 643542 | 53526965 ~ 53652401 (+) | False | XLOC_025761 |
| TCONS_00052381 | lncRNA | downstream | 722743 | 53606166 ~ 53632347 (+) | False | XLOC_025761 |
| TCONS_00052382 | lncRNA | downstream | 748695 | 53632118 ~ 53649626 (+) | True | XLOC_025761 |
| TCONS_00052383 | lncRNA | downstream | 1227966 | 54111389 ~ 54111972 (+) | True | XLOC_025765 |
| TCONS_00050637 | lncRNA | downstream | 1339902 | 54223325 ~ 54226528 (+) | True | XLOC_025763 |
| TCONS_00050616 | mRNA | upstream | 5139 | 52737565 ~ 52801302 (+) | False | XLOC_025749 |
| TCONS_00050617 | mRNA | upstream | 5335 | 52753416 ~ 52801106 (+) | True | XLOC_025749 |
| TCONS_00050615 | mRNA | upstream | 74407 | 52702700 ~ 52732034 (+) | True | XLOC_025748 |
| TCONS_00050614 | mRNA | upstream | 105831 | 52684556 ~ 52700610 (+) | True | XLOC_025747 |
| TCONS_00050611 | mRNA | upstream | 202758 | 52545014 ~ 52603683 (+) | False | XLOC_025745 |
| TCONS_00050621 | mRNA | downstream | 16378 | 52899801 ~ 52952026 (+) | True | XLOC_025752 |
| TCONS_00050622 | mRNA | downstream | 70066 | 52953489 ~ 52980049 (+) | True | XLOC_025753 |
| TCONS_00050623 | mRNA | downstream | 116539 | 52999962 ~ 53076469 (+) | False | XLOC_025754 |
| TCONS_00050624 | mRNA | downstream | 169346 | 53052769 ~ 53074492 (+) | True | XLOC_025754 |
| TCONS_00050625 | mRNA | downstream | 232749 | 53116172 ~ 53224280 (+) | False | XLOC_025755 |
| TCONS_00050613 | other | upstream | 186266 | 52620058 ~ 52620175 (+) | True | XLOC_025746 |
| TCONS_00050578 | other | upstream | 2731251 | 50069595 ~ 50075190 (+) | False | XLOC_025717 |
| TCONS_00050573 | other | upstream | 3673964 | 49132341 ~ 49132477 (+) | True | XLOC_025709 |
| TCONS_00050561 | other | upstream | 5345838 | 47460488 ~ 47460603 (+) | True | XLOC_025690 |
| TCONS_00050528 | other | upstream | 7171255 | 45635077 ~ 45635186 (+) | True | XLOC_025668 |
| TCONS_00050635 | other | downstream | 1184100 | 54067523 ~ 54067639 (+) | True | XLOC_025764 |
| TCONS_00050662 | other | downstream | 2415620 | 55299043 ~ 55299158 (+) | True | XLOC_025787 |
| TCONS_00050664 | other | downstream | 2600090 | 55483513 ~ 55483647 (+) | True | XLOC_025789 |
| TCONS_00050682 | other | downstream | 4752951 | 57636374 ~ 57639448 (+) | False | XLOC_025808 |
| TCONS_00050688 | other | downstream | 4942516 | 57825939 ~ 57829919 (+) | True | XLOC_025812 |
