RNA id: TCONS_00050615


Basic Information

Item Value
RNA id TCONS_00050615
length 2422
RNA type mRNA
GC content 0.47
exon number 12
gene id XLOC_025748
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52702700 ~ 52732034 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCATCAGTTTGCAGGGTCCCACCCCTTTAAACGTCACCGAGTAACATCCCCTTTAACACTCTTACATCTGCAGTGTTGTCAATGCAGGCACTTTTTAGTCGgcggaaatatttggaaaaaagttGCCCGTTTTTAACTTTCTACCTCCTCATTAGTCCTTGGTAACTGTGGGCTGTAATAGCTCGCATGTATGCTTGTAACTAGTTTGTGCTTCGCAATGCGGTGTTTCGTGCTGTTTGTGTCGGTTTTGTGCTCCTGTTTGATAAACAGCGGACCAGCTCAAGGATACTTCCATGAGGAGCGCTGGAGCCCGGAGTCTGCAATACTCGCCCCGCGGGTAATGATTGCACTCATCTGCCGGAACAACCAGCACTCGCTGCCGCATTTCCTCGGGACCATCGAGCGCCTCAATTACCCGAAAGACCGCATCGCGCTGTGGGTAGCGACTGACCACAATGTAGACAACACCACATACCTGCTGCGAGACTGGCTCATCAACGTACAGAAACTCTACCATTATGTGGAGTGGAGGCCGAAGGAGCAACCAAGTCAGTATAATGATGAGGAAGGACCAAAGGATTGGACAAATGAGCGTTATGCTTACGTCATGAAACTTCGACAGGCAGCGCTGGAGTCTGCACGAGAAATGTGGGCCGACTATCTTATGATGATTGATTGTGATAATCTCCTGATCAACCAAGATGTCTTATGGAAGCTAATAAAGGAGAACAAGACAATTGTGGCACCAATGATGGAGTCTCGTGCTGCCTACTCAAACTTCTGGTGCGGAATGACCTCACAGGGCTACTATAAACGAACTCCTGCCTACATTCCCATCCGCAAGCAAGTTCGTAAGGGATGCTTTGCGGTTCCAATGGTGCATTCAACGTTCCTGGTGGACCTGCGGAAAGAAGCTTCCAGACAGTTGGCTTTTCATCCGCCGCATCCAGACTACACCTGGGCTTTTGACGACATTATAGTCTTCGCCTTCTCAGCCCGAATAGCAGAAGTCCAAATGTTtatttgcaacagagaaatatatGGGCACCTCCCAGTTCCTCTTCGTGCCCACAGCACTCTACAGGATGAGGCAGACAGCTTCATTCACACTATGCTGGAGGTCAACGTACGAAATCCTCCAGTTGAGCCTTCAAGATACTTACCCAAACCTGTCAGAAAACCTGATAAAATGGGCTTTGATGAGGTGTTTATAATCAACCTGAAGCGACGAGGTGACAGGCGTGAGCGCATGCTGAGGGCATTGACAGAGCAAGAGATTGAATGTAAGATTATCGCTGCTGTTGATGGCAAAGCTATGAACGTCAGTGAGATCCATGCTTTAGGAATACACATGCTGCCTGGCTACAGTGACCCTTATCACGGCAGACCTCTCACTAAAGGAGAGCTGGGCTGCTTCCTGTCCCACTATAACATCTGGAAAGAGATTGTAGATCGAGGATTGAAGACCTCGCTAATTCTTGAAGATGACTTAAGATTTGAGATTTTCTTCAAGCGTCGCCTGCAGAATCTGTTGCTTGAGCTCCAAAGTCAGAGTCTGGACTGGGACCTCATTTATATTGGGAGGAAGAGGATGCAAGTGGACCGGCCTGAAAAAGCAGTACCAAATATTCGCAACCTAGTAGAGGCAGACTATTCCTACTGGACCTTAGGTTACATGATGTCCTTACAAGGAGCCAGAAAGCTTCTCAAAGCCCAACCACTTAGTAAAATGTTGCCTGTCGATGAATTCCTTCCTGTTATGTTCAATAAGCATCCTGTATCGGATTACATGGAGCAGTTTGAGACGAGGGACCTGAAAGCGTTTTCAGCAGAGCCCTTGCTGGTGTTCCCCACACACTACACGGGTGAGGCTGGCTACATCAGTGACACAGAAACCTCTACGGTATGGGACAATGAGAAAGTACACACGGACTGGGACAGGGAGCGTCGGGGTAAGACCCAGGAACAGGGTGAGATCAGCACAGAGGCCCAGAACTCAGATGTGCTTCAGTCTCCCCTGGACAGGACAGCCCGAGATGAACTATGAGACTTTTTTTTGGACTCTGGACAGCTAGACTTGCTTCTGGAGGACATTCAGCCTAATAAGCACAATATGAGGGAACAGAAGAGGCCTTTTTAGagattttttaatgttaaacatTTTGTCCCTTCTTTTCTAGATGCATTGATGTGCACAGCAAGTGTTCATCTAACGATTAAGATGATTAATTGGTAACTGTTCGTAATTAGGTTCCATTTGTTAGGTTATGGATACAGTGCATCCAGCAGGTTGTCAGGTTAACCAGCATACAGACACAATGAGACCGAAGGGCTTTATTGTGCAAAAACAACAATCCTGTGGTGCATTTCCGAAAAGCATTATTAGCAAACTAAATTCGCTAACTCCATCGATACGATT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154410

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052379 lncRNA upstream 310495 52390252 ~ 52392205 (+) True XLOC_025739
TCONS_00052798 lncRNA upstream 313661 52377578 ~ 52389039 (+) True XLOC_025738
TCONS_00050604 lncRNA upstream 323228 52367302 ~ 52379472 (+) True XLOC_025737
TCONS_00052797 lncRNA upstream 438554 52224103 ~ 52264146 (+) False XLOC_025735
TCONS_00052380 lncRNA downstream 74238 52806272 ~ 52809710 (+) False XLOC_025750
TCONS_00052799 lncRNA downstream 794931 53526965 ~ 53652401 (+) False XLOC_025761
TCONS_00052381 lncRNA downstream 874132 53606166 ~ 53632347 (+) False XLOC_025761
TCONS_00052382 lncRNA downstream 900084 53632118 ~ 53649626 (+) True XLOC_025761
TCONS_00052383 lncRNA downstream 1379355 54111389 ~ 54111972 (+) True XLOC_025765
TCONS_00050614 mRNA upstream 2090 52684556 ~ 52700610 (+) True XLOC_025747
TCONS_00050611 mRNA upstream 99017 52545014 ~ 52603683 (+) False XLOC_025745
TCONS_00050612 mRNA upstream 99732 52545400 ~ 52602968 (+) True XLOC_025745
TCONS_00050610 mRNA upstream 163037 52528606 ~ 52539663 (+) True XLOC_025744
TCONS_00050609 mRNA upstream 205935 52487695 ~ 52496765 (+) True XLOC_025743
TCONS_00050616 mRNA downstream 5531 52737565 ~ 52801302 (+) False XLOC_025749
TCONS_00050617 mRNA downstream 21382 52753416 ~ 52801106 (+) True XLOC_025749
TCONS_00050618 mRNA downstream 74313 52806347 ~ 52883424 (+) False XLOC_025750
TCONS_00050619 mRNA downstream 74407 52806441 ~ 52883423 (+) True XLOC_025750
TCONS_00050621 mRNA downstream 167767 52899801 ~ 52952026 (+) True XLOC_025752
TCONS_00050613 other upstream 82525 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 2627510 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 3570223 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 5242097 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 7067514 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050620 other downstream 96878 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 1335489 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 2567009 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 2751479 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 4904340 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000113_01480199_01500090.mRNA True 3141 mRNA 0.46 16 CI01000113 1479477 ~ 1500271 (-)