RNA id: TCONS_00050618


Basic Information

Item Value
RNA id TCONS_00050618
length 1340
RNA type mRNA
GC content 0.56
exon number 9
gene id XLOC_025750
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52806272 ~ 52883424 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctCTGCTTGAGCGTCACTCCGTCTTGGACTATAATAACACTGAAGTTTGGCTTTTGGAGGTCTGTTGCCCGTCCCCTTCTTCAAAGGTATTTTGATGTTACCTACAGAAATCTCAGGAGGAGTGTGTTTCAGCACAAGTCAGCACTCCAAAGAAGGAAGGAGCGGAATGAAAACAGAAGAAAACCAGTCATGTCTTCAGCAGGCCCCCTCCGCCACACCTTACGCTGACTCCTGTTCTCCTCCACCAGACCATGTGGGAGGAGGTGAGGTGTGCGCAGGCTGCGAGTCCCCCATCGCGGACCGGTTCCTGCTGCGCGTCAATGAACTGTCCTGGCATGAGACCTGTGTGAAGTGTGCGGTGTGTCGCAGCGCTCTGAGCGGGACCTGCTACTGTCGGGACAGACTGCTCTACTGCAAGCACGATTACGAGAAgtTGTTTGTGCGTAAGTGCAGCGCGTGTCTGCAGGCGATCGGCCGCTCAGAGCTCATCATGCGAGTGTTGGGACAGGTGTATCACCTGGGCTGCTTCAGCTGCTGCGAGTGTGAGCGCCGCCTGCAGAGAGGAGATGAGTTTGTGCTGAAGGAGGGACAGCTGCTCTGCAGAGGAGACTAcgagaaggagagagagatgcTGGCCGCCATCAGCCCGGCACCCACAGAGTCAGTAAAGAGTGAGGATGAGGAGGGTGGTGGTGTCTCTGTCGGAGGAAAGGCTGGGGATGATGGAAAGGAGCACAAGAGATCCAAGAGGCCCCGGACCATCCTGACCACACAACAGCGGCGCGCCTTCAAGGCTTCCTTCGAAGTGTCTTCCAAACCCTGCCGAAAGGTCAGAGAAACTCTGGCAGCTGAGACTGGACTGACGGTCAGGGTCGTGCAGGTGTGGTTCCAGAATCAGAGGGCAAAGATGAAGAAGATCGCCCGCagacagcagcagcaacagcagcagcaagAACAGGAGCAGATGGGGGGCTCCAGACGGGGCCCGAGCAGAGGGGGGCGCCAGAGTAACGACGACAGCGAGGATGGCTCCAGCACTCACGGACTGGACGGTCTGCTCTCATATTCCTCTCTGCCTCGACAACAACTGCTGGCTATAGATCCAAACATATATGGCAGCGAGCAGTTTAGACACGGCCTCACGCCTCCACAGCTGGGCCCTGACCAGATGCACTCCTATGACTCAGAGACGGTTTTCCATGACCTAGACAGTGATGGAAGCCTCAGTCATCTTGGCGACTGTCTCTTGTCGACTGCGGATGGCAGCGTTCTGGCAGGCCGCATAGGAAACCCCATCGATCGCCTCTACTCCATGCAGAACTCCTACTTTACTTCATGAC

Function

GO:

id name namespace
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0150034 distal axon cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-131213-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in diencephalon; epiphysis; hindbrain; midline column; and superior raphe nucleus.

Ensembl:

ensembl_id ENSDART00000168151

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052379 lncRNA upstream 414142 52390252 ~ 52392205 (+) True XLOC_025739
TCONS_00052798 lncRNA upstream 417308 52377578 ~ 52389039 (+) True XLOC_025738
TCONS_00050604 lncRNA upstream 426875 52367302 ~ 52379472 (+) True XLOC_025737
TCONS_00052797 lncRNA upstream 542201 52224103 ~ 52264146 (+) False XLOC_025735
TCONS_00052799 lncRNA downstream 643541 53526965 ~ 53652401 (+) False XLOC_025761
TCONS_00052381 lncRNA downstream 722742 53606166 ~ 53632347 (+) False XLOC_025761
TCONS_00052382 lncRNA downstream 748694 53632118 ~ 53649626 (+) True XLOC_025761
TCONS_00052383 lncRNA downstream 1227965 54111389 ~ 54111972 (+) True XLOC_025765
TCONS_00050637 lncRNA downstream 1339901 54223325 ~ 54226528 (+) True XLOC_025763
TCONS_00050616 mRNA upstream 5045 52737565 ~ 52801302 (+) False XLOC_025749
TCONS_00050617 mRNA upstream 5241 52753416 ~ 52801106 (+) True XLOC_025749
TCONS_00050615 mRNA upstream 74313 52702700 ~ 52732034 (+) True XLOC_025748
TCONS_00050614 mRNA upstream 105737 52684556 ~ 52700610 (+) True XLOC_025747
TCONS_00050611 mRNA upstream 202664 52545014 ~ 52603683 (+) False XLOC_025745
TCONS_00050621 mRNA downstream 16377 52899801 ~ 52952026 (+) True XLOC_025752
TCONS_00050622 mRNA downstream 70065 52953489 ~ 52980049 (+) True XLOC_025753
TCONS_00050623 mRNA downstream 116538 52999962 ~ 53076469 (+) False XLOC_025754
TCONS_00050624 mRNA downstream 169345 53052769 ~ 53074492 (+) True XLOC_025754
TCONS_00050625 mRNA downstream 232748 53116172 ~ 53224280 (+) False XLOC_025755
TCONS_00050613 other upstream 186172 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 2731157 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 3673870 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 5345744 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 7171161 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050635 other downstream 1184099 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 2415619 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 2600089 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 4752950 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 4942515 57825939 ~ 57829919 (+) True XLOC_025812

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000113_01432095_01456239.mRNA True 1129 mRNA 0.56 7 CI01000113 1431986 ~ 1456239 (-)