RNA id: TCONS_00050625


Basic Information

Item Value
RNA id TCONS_00050625
length 6023
RNA type mRNA
GC content 0.54
exon number 20
gene id XLOC_025755
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53116172 ~ 53224280 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGAGCTGTTTGTTCTGGATTGTGGGAGAGAAAGAGCCCGCGCGTCCTCACAACAAAATAAAGCAGTAGTGGCCTCTTACCGTGTGATCAGCTTGTAGCCTGCGACTGAGCTGGTGACTTCTCTCTGGACCGCAACAAAGCAGCTCTTCTGCGGAGTGCTTCCCGAGAAGATGTGCGTGCTCAGATAAGAGATTCTTCACACCAGAGACGAAAATAGAGCCCAGCGAGGAGTGCAATGGAATTAGCGGTGCTCTCTCTGTGGAGCCCGCGCCCGGCTCGAGACTGAACGAGTGGTGTCCTGCGCCACCCCCTCCCATCCCTCTGCCCGCGCTCCACCCCGCCAGTATGGGGGACGGCCTGGACGCAGTTCAGATGTCGGGGAGCAGCAGCAGTCAGGGGCAGCCCTCGTCCCAGGCCCCTTCTTCCTTCAACCCGAATCCCCCAGAAACCTCCAACCCCACCCGGCCCAAGCGCCAGACCAACCAGCTGCAGTACCTGCTGAAGGTGGTGCTGAAGAGTCTTTGGAAGCACCAGTTCGCTTGGCCTTTTCATGCTCCTGTCGACGCCGTTAAGCTAAATCTGCCTGACTATTACAAGATAATCAAAAACCCTATGGACATGGGAACAATCAAGAAACGCCTAGAGAGCGCATTCTACACCAGTGCCCAAGAATGTATTCAAGACTTCAACACCATGTTTACCAACTGCTACATTTACAATAAGCCTGGGGATGACATAGTCTTAATGGCCGAAGCACTGGAGAAGGTGTTCCTTACCAAGATTTCAGAGATGCCCCAGCAGGAGGTTGAAATATCCACCACGGCCGGCAAAGGTCGTGGCCGGGGCAGGAGGGATCCAGACATGAACATGAAGGTCGGACCTGTTCTGGAGCCTTTGACTGCAAGCCCTCAAACACGTGGCCTTTCTAATCTTACCCCAGGGCCACAAACTAGAGGACCACCACAGGGTCCACCTACTTTACCTCCCCAGCCTATAGTGCAAATTCAAGCCTTGCCCCCTCGAGTGCCCCCTTCGCTTCCCACAATCCCTCTCCACGCGCCTCAATTAGGGCCGCCTTTTTCGTTGGGCCCCACTGACTGCAACCCACCGGCCCCCATCATAACGGCTGTGCCTCCCCCCACTCAAACCGCCCTGCCACCTGTGCACATTCAACAGAGCGCTGCTCCACCTATTCTACAAACTCCCATCTCAATACCTAACAAAagaaaaagtcagaaaaggaAAGCAGACACAACGACACCTACGGCAAACGACCAGCTGAACGAGTCCTCACCCGCCGAGTCAAAGTCAGGCAAGACTCTTCCACGCCGGGATAATACACGACCAAGCAAATTACCCAAAAAGGAGGCACCGGACTCCCAGCACCATTGGACAGCCGCCCCTGGAACCCCTAGCCCCAAACAGCAAGAGCAGTTACGCTATTGCTCGGGCATCGTAAAGGACATGTTTGCTAAGAAACACGCAGCGTACGCCTGGCCCTTCTACAAGCCAGTGGACGTGGACACTTTAGGGCTGCACGACTACCATGACATCATCAAACACCCCATGGACCTCAGCACGATTAAGgataagttggaaACCAGACAGTACAGAGAAGCTCAGGAGTTTGCAGCAGATGTACGGTTAATGTTCTCCAACTGCTACAAGTACAACCCTCCAGACCATGAAGTGGTGGCTATGGCACGCAAACTACAGGATGTGTTTGAGATGCGTTTTGCTAAAATGCCTGATGAACCAGAAGAAATGCTGGCCCCTGCTCCTGCGCCAGTGCTCCATCCGGCACCTGTAAAGACACAGCCGGTCATGGCCACTGCCTCATCCTCGGACACCTCCAGCGATTCGTCATCGGAATCCGAGTCCTCCACGGACGATTCTGAAGAGGAAAGAGCCCAGAGGCTAGCAGAGCTTCAGGAGCAGTTGAAAGCGGTTCATGAGCAGCTGGCTGCCTTGTCCCAGCCTCAGGCCAGCAAACCAAAGAAGAAGGAAAAGGaaaagaaggagaagaagaaagaCAAGCACAAAAAGAAAGCAGGAGTCATGCCGGCACTGGAAGAGATCCTGGAGCCGCCTCCTGCCCTCAAGCCTCAAGGAAAGCCCAAGAACAAGGATCCTCTGCCTAAGAAGTCTAAGAAGCTTAGCAAGAAGGAGGGAGGAAAGAGCAACCGCTCCATGGCTCCTCCAGGTGCCGCCCCACCAACTCTGCAGCCTGTGCCAGGTCTGGATACTGAAGAGGATCTGGGTCTTACTGGAGGGGCTGCGATGGCAGGCATGGCCGCGGGGGAGAAGTGTAAACCCATGTCCTATGAAGAGAAGAGACAGCTGAGTCTGGACATTAACAAGCTGCCTGGAGACAAGCTGGGCCGAGTGGTTCATATCATTCAGTCCCGCGAGCCTTCACTCAAGAACTCCAACCCGGACGAGATTGAGATCGACTTCGAGACGTTAAAACCTTCAACGCTGCGGGAGCTGGAGAGATACGTGTCGTCCTGTCTTCGCAAGAAGAAGAAACCAGCCGTTCCGGAGAAGTCCATGGAGGCGATAAGTGCTGTCAAGACAAAAGGCACTTCCTCCGATTCAGGCAGCAGCAGTGAGTCCAGCTCCTCAGAAAGTGAAGACTCTGAGACAGGGATGGCTTCTAAGCCAAAGAAGAGAGGGAGAGGTGAAGGAAAGAAGGCTCATCACCAGACCACGGCTCCAGGCATGCCTCTGCCGCAGGTCCCCCTTCAACCCCAGACCCCTGCTCTGCAACCCAGCATTCAGCTGAAGCAGCAGCAGCCGCAGCATCCCTCTCCAGCTGCTTACATGCCACCTCCCGTCACGGCTCTGGAGCCCTCGCAGCTCCTGGAAAACCCCTTTGACCCTCTGGCTCACTTCATGCACCTTCCCCACCACGCAAACGACTCGTCCTCTCCTGCTCCACCTCACCTCAACGCTCACCCTCCAGGAGGCCCAGTGTCACCTGAGACGCATCCGTTCCTCAACCAGCACCCCATCCTTCCATCCCCAGCCCTGCACAACGCTTTGCCCCAACAGCCTTCACGGCCCAGTAACAGGGCAGCCCCACTACCTCCTAAACCTCTGCAGCAAAGCACGTCCCAACAGCAGCCACCACCCCAGCAGACCCTGGTGCCCCCACAGCAGCTTCAgccgcagcagcagcagcctgCTCCACCCCAGCAGCAGCACCTCCCTCATCACCCGCTACACGCCCCACAGCAGATGCGCCCAAGGCCGCTATCCCCTCCTACGCTCACACCCCAAGGCCTGCTCTCCTCTCAGCCCCCTCAGATGCTGCTGGAGGATGACGAGGAGCCTGTGCCCTCCATGTCCCTGCCCATGTACTTGCAGCACCTACAGCCCAACCGACTACAGGCAACGCCGACATCACTGATGCAGTCGCTGCAGAGCAGGCCTCAGCCGCCAGGACAGCCGTCTCTGCTGCAGTCGGTGCAGGTTCAATCTCACTTGCCCCCTCCGCAGCTTCCCGTTCAGACTCAAGTGCAGCCGCAGCAGCCAGCGCCACACCAGCCCTCGCCACAGCTCTCACAGCACCAGGCCAGACACATGCAGCAGCTCGGCTTCCCTCAAGGCCCGCTGCAGACCGCACAGACGCAGCCCGGTCAACACAAAGTGTCCATGCCCTCCACAAAAGCACAGCAGATCATCCAGCAGCAGCAGGCCACGCAGCATCACTCGCCACGCCAACACAAAGCTGACTCCTACAACTCCGCACACCTGCGAGATAACCCCTCCCCGCTCATGATGCATTCCCCTCAGATCCCCCAGTATTCTTTAGTCCACCAGTCCCCCTCTCAGGACAAAAAGGAACCACAGCGAGGTCCTTCAGCTTTGGGTGGCATTAAAGAAGAAAAGCTGCCCCCGTCACCTGTGATGCGCGGTGAGCCCTTCAGTCCGGCCATGAGACCAGAGTCTCATAAACATCCCGACAGCAAACCTACAATGCCGGGCCACAGCCAACAGAGAGCAGATATGAAACCACTTGAAATGTCCCGTCCTGTGATCCGCTCGTCTGAACAGAGCGGCCCGCCTCCTTCCATGCAGGACAAAGAGAAGTTTAAACAGGAGCCCAAGACGCCCTCGGCTCCTAAAAAGGTACAGGATGTGAAATTTAAGAACATGGGTTCCTGGGCGAGCCTGGCACAGAAATCCTCCACCACTCCCTCGTCCGGTCTGAAGTCCTCCAGTGACAGCTTCGAGCAGTTTCGGCGTGCTGCCCGAGAGAAGGAAGAGCGAGAGAAAGCCCTCAAGGCCCAAGTCGAGCAAGCTGAGAAAGACCGGCTGCGTAAAGAACAGGAGAAACTTCGGGGTCGAGATGAGGAGGACTCGATTGAGCCGCCTCGACGGCCTCTGGAGGAGCCCCGCAGGCGGCAGGAGCCCCAGCAGGTCCAGCCGCCACCACAGCAGCACCAAACTCAAGCCCAAGCCCAAACCCTAAACCCGGCACAGTCACCCTCGGCCTCGCAGCCGACACAAGCCCCACCACAGTCGCCCGCCTCGTCCCAGAGTGCACTTGACCAGCAGAGGGAGATGGCACGTCGCCGAGAGCAGGAGCGGAGAAGGAGAGAGGCGATGGCAGCTACTATCGACATGAATTTCCAAAGCGATTTGATGGCGATCTTTGAGGAGAACTTGTTCTGAAGTGCGAGAGGACGAGACAAACTGCGAAACGGCTCTACACGGACAGAACGAACTCAAAAAAGCAGTAAGGGAAAAAAGACCCCATCCGACCACCCGAAACACTGAAGAGGCGATGGATTCGCTGAGGCCCCgagagagagaaaccaggctccgGCTCTCCTTTTGCCTTAGCTGAATGAGGGACCCTCACACATGGGCGGCTGCGCCTCTCCGGCTTTTCCTCCTGGATTCGCCATTGTGACCCTCCCGGGAAAAAGAGAGGACTCTTGTGTGACTCTTACTTCAGAATATGGGAGCAATGGACAATGCGATCGGTTGAGGAATACCCGAACGACAACAATGATATGTACTGGTTCTCTGTAGTACGGCATCCATCGACTGCCAGATGTCTGTGGGGGATTAGAAAACCTCTCTGTTTCCTGTTTGATTTGCTTTCCCTCCCATCGTTTCGTTTTCGCTATGTATCCCCCATTTTTTCTTTCGTGAGGCAAATGGCAGGATGGGTTCGGGGCACTTAAGATGATCTTCCTCAGGAGAGGAGATCCAGCTGGCCTTACACCACAACACAAACAATACTCTCACCAGGGGCTGTGACAAAAATGACTAAACATGGTGTGTGTTTCACACTGTTATCATGTGCAGATTTTTCATTATGTAGGATCTACTGTACAAAAGGTATTTTCTTAATTACTGTTTTGGttggttgtgtttgtttttttgtttttcttttcttttttcgtttgtttttgttttgtttttttaaggtttttaacTCTCTTACCAACACCTTACCCTCTGATGTCTATGCCAAACACCCATATCCTTTTACGCTGATAGCCGAGACCCGAAACGCTTCACTTAACATGTCtttctaaatatataaatatattttcttgttCTCCCCACTCGTCATTTAAAAGTTTAGCTAGCCTTGTAGAAAATAAACCCTAATATATGCATTATTCTGACAAGTGTTAATCGAGGACGAAGATGTACTTTTCATCGCTCATCGTTTTCACCTGGCGAGGGGATCCTAGAGCCTGTAAGCGCGGTTTCTGAGCATCGTttaatttgaatataatttaaagaaagcCAGAACTATTTTAAGTGTATTATACGTATAGAAGGAAAACATGCAACTCTGTGTGATGCATCGGAGAGCGTCACGAACGGAGCTTTCAGCTGGTTACTGCATGACTCCTCTTTTTCTTTTCACAGATCATTTATTACAACTGCACAGACAAACCGAGAGAGAGAAAACGATGTTCGCTGTGCTAGATATAACGACAAAAACTCGtcaacgacaaaaaaaaaaaaaaaaatcaaaccattCTGATTTATCA

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0050727 regulation of inflammatory response biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain biological_process
GO:0000793 condensed chromosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0042393 histone binding molecular_function
GO:0002039 p53 binding molecular_function
GO:0070577 lysine-acetylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
ko01001 Protein kinases
ko03021 Transcription machinery
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-267 Enables chromatin binding activity and histone binding activity. Acts upstream of or within thrombocyte differentiation. Located in condensed chromosome and nucleus. Is expressed in several structures, including blastoderm; blastodisc; notochord; post-vent region; and tail bud. Human ortholog(s) of this gene implicated in colon cancer and idiopathic pulmonary fibrosis. Orthologous to human BRD4 (bromodomain containing 4).

Ensembl:

ensembl_id ENSDART00000115117

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052380 lncRNA upstream 306462 52806272 ~ 52809710 (+) False XLOC_025750
TCONS_00052379 lncRNA upstream 723967 52390252 ~ 52392205 (+) True XLOC_025739
TCONS_00052798 lncRNA upstream 727133 52377578 ~ 52389039 (+) True XLOC_025738
TCONS_00050604 lncRNA upstream 736700 52367302 ~ 52379472 (+) True XLOC_025737
TCONS_00052378 lncRNA upstream 886019 52229866 ~ 52230153 (+) True XLOC_025735
TCONS_00052799 lncRNA downstream 302685 53526965 ~ 53652401 (+) False XLOC_025761
TCONS_00052381 lncRNA downstream 381886 53606166 ~ 53632347 (+) False XLOC_025761
TCONS_00052382 lncRNA downstream 407838 53632118 ~ 53649626 (+) True XLOC_025761
TCONS_00052383 lncRNA downstream 887109 54111389 ~ 54111972 (+) True XLOC_025765
TCONS_00050637 lncRNA downstream 999045 54223325 ~ 54226528 (+) True XLOC_025763
TCONS_00050623 mRNA upstream 39703 52999962 ~ 53076469 (+) False XLOC_025754
TCONS_00050624 mRNA upstream 41680 53052769 ~ 53074492 (+) True XLOC_025754
TCONS_00050622 mRNA upstream 136123 52953489 ~ 52980049 (+) True XLOC_025753
TCONS_00050621 mRNA upstream 164146 52899801 ~ 52952026 (+) True XLOC_025752
TCONS_00050618 mRNA upstream 232748 52806347 ~ 52883424 (+) False XLOC_025750
TCONS_00050627 mRNA downstream 4404 53228684 ~ 53231344 (+) True XLOC_025756
TCONS_00050628 mRNA downstream 16282 53240562 ~ 53274285 (+) True XLOC_025757
TCONS_00050629 mRNA downstream 92760 53317040 ~ 53350547 (+) True XLOC_025758
TCONS_00050630 mRNA downstream 127738 53352018 ~ 53449437 (+) True XLOC_025759
TCONS_00050631 mRNA downstream 287656 53511936 ~ 53522208 (+) True XLOC_025760
TCONS_00050620 other upstream 287166 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 495997 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050578 other upstream 3040982 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 3983695 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 5655569 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050635 other downstream 843243 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 2074763 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 2259233 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050682 other downstream 4412094 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 4601659 57825939 ~ 57829919 (+) True XLOC_025812

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000113_01259501_01275141.mRNA True 4225 mRNA 0.56 18 CI01000113 1259138 ~ 1275141 (-)