CI01000113_01458405_01476967 (GMIP)


Basic Information

Item Value
gene id CI01000113_01458405_01476967
gene name GMIP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1458405 ~ 1476967 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_01458405_01476967.mRNA
CCCAGGATGCCGACCTGACCCTCTGTCGCTGCGAGGGTGGCGTGGAGCTTGCCCTGCAGTACGCCAAAATGTGGTGCCGTTATGCCAAAGACCTGCTGACCTGGATGGACAAAAGAATCAGCCTGGAGCAAGAGTTTGCAAAGAGTATTATGAGAGCAGCAGATGCAGCCAAGTCATGTGTTGCTCAACAGTCCACGTTAATGCTGTTAAATCTGTTCGGACACACTCCACAGGACATGATGCCTCTGCAGTATATCTACACCCTGGCCCTGGAAAATGATCTCAAAAGCAGCACATCAGCCAAACAAACTGCTGAACTCATACAACAGCGCTGCTACCAGGCTCTCTCAGCTAAGAAGAACGAAATCGACAAATGGCGACGGGAATTCAAAGAGCAGTGGTCAAAAGAACAGAAGAGGATGAACGATGCTGTGTCTGCACTGAAGAGGGCACGACAGCAATACCTGCAGCGCTGTGAGGAGCTGGAGAAGGCCAAAGCCATGACGGCCAAAGCCGAAGAGGAGACAGGGGGTAACAAGACCCTGGACAAGCGGAGGAAGTCCAGAGATGACGCCCAAACTAAGGTTACAGAGACTGAGACGCTGTACAAGCAGTGTGTGTCTGATGCAAACAACCATCAAAAAGAGCTGGAGAAGGTGAAGCGCAAAATCATTGTCCACATCCGCAAGCTCATCTGTCAAGGAGACACTGTGCTGAAAGAGGCAACGGTGAACATGTTCTATTACCAGCGGCAGCAGACTGAGCCGGTTCCTCTGGCCTACCAGAACTTGGAGCTGACCTGCAGGCCCTGTGAGCCAGGTGAACCCTACCTGCAGTACATCCTGGGAAAAGGCATGCCCGACCAGCCTCTCCAGAACTTCATGTTCCAGGAGTTCATCCCCCAAAGCAGGAGATCCCCACAAACAGGTCGGCGTAAACAAAGCACTGCTCTGAGTTACCAACAAGATTTTTATGCGCTACCAGATGATCTGAAACACAGCAGCAGTTTAGTAGATGGCCGACGGCCTGGCCACAGTGACCGAGACAGCACAGGAGGAAGTCTTGAATCACTGTCCAGTCCAGCTCATGGGAGCCGTAAGCTGCCCAAGGCCTCCTCCACAGGAACCATGTCTTCAGATGATCTTGATGAGAACGTTCTGCAAGAAGCAGAGAGCGAAGAGGGTTTATCTGATAGCAACGGAATGTCATGCAAACCACGAGCTGCATCACGTGCCGCCTTGACCCACAGACTGAGAAAAATGAAGAGCAAGATGGTCAAGTGTAAGCAATGTGACAACTACATCCTGGTCAACGGGATTGAGTGTGAGGAGTGTGGCCTTGCAGTCCACAGGAAGTGCCTGGAGGTGTGCCAGATGGAGTGTGAGCACAGGAGGGGATTCATCTTTGGGATGGAGTTCTCCCTGCTGCCCAGAGAGATCCCAGACTCTGTGCCCTTCGTTGTCCTGCGCTGCACCGAAGAGATTGAGAACAGGGCTCTTGGAGTCCAGGGAGTGTACAGAATCAGTGGCTCCAAACCTCGCATTCTGAAGTTATGTCAGGCCTTTGAAATCCAGAAAGACCAAGTTGACCTTAGTGACCTCTCACCGCATGACATCACCTCCGTACTCAAGCACTTCTTCAAAGAGCTTCCAGAGCCGTTACTCACCTTCGACCTTTACAACGAATTCATCAACGCGGGTAAGGAGATTCAGAGGCTTAGTGAAAAGGACAATGCTGCCGAAACTGTAGGGATTGTGGAGAGTATTGTGGTCAAACTCAGAGAGCTAACTGGTCGATTGCCTCTGTGTAACTACAACACAGTGCAGCACATGATGGCCCACTTGAACAGGGTGGCAGAACAATACGAAGACAACAAAATGTCTCCAGGAAACCTGGGCATCGTGTTTGGCCCCACACTCCTGCGGCCCCTGGTGTCGGGGGACGTGTCGATGATCGCTCTTCTGGAAACCAGCTATCAGGCTCTTCTCGTGGAGTTCATGATCTCACACTATGACCAAGTATTCGGCTCCGCAACAAGATCCAGCACACCTCCGCCACCGCCTCCCACGGCACCCCTCCCAGACACCCCACCCAGAGCGACATGTCCCGTTTCTCCTGCCAGCAGTTCCTCACAGGACCCCGGAGCCGCGTCCAGGGAACGTCCACGCTCACTGGAGAATCGCACTATCAAGAGAGATTCAAGCGAGGGTTATATTTCTGACAAGTCATCATCCAATGAAGCAATGGACCAGCTGAGCCCAGAAGCCAATGAGAGAGCAGTCCTGGCTATGAGGGCGACAGCATCTCCTCAGGGGCATCTGGAGCAGGCTGCAGAAAGTCAACTACAAACTCAGTCGAGGGGTCACTTCAGCAGGCAGCCAGTCAAGTATTACCGACAGGGTTCGGCAGGAGCACAATTACGCAAAGCAGGCTCTCA

Function

symbol description
gmip Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and negative regulation of GTPase activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in plasma membrane. Orthologous to human GMIP (GEM interacting protein).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K20653 GMIP, ARHGAP46; GEM interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_01458405_01476967.mRNA True 2437 mRNA 0.53 17 1458405 1476967

Neighbor

gene id symbol gene type direction distance location
CI01000113_01432095_01456239 LMX1AL coding downstream 2166 1431986 ~ 1456239 (-)
CI01000113_01404787_01423732 ATP13A1 coding downstream 34673 1404666 ~ 1423732 (-)
CI01000113_01396970_01402406 NA coding downstream 55999 1396431 ~ 1402406 (-)
CI01000113_01351820_01359750 PBX3, PBX1 coding downstream 96747 1351412 ~ 1361658 (-)
CI01000113_01259501_01275141 BRD4, BRD2, BRD3 coding downstream 183264 1259138 ~ 1275141 (-)
CI01000113_01480199_01500090 COLGALT1 coding upstream 2510 1479477 ~ 1500271 (-)
CI01000113_01502427_01506373 NA coding upstream 25194 1502161 ~ 1506373 (-)
CI01000113_01554726_01565897 SLC27A1A, SLC27A1 coding upstream 77177 1554144 ~ 1565897 (-)
CI01000113_01569971_01571224 PTGER1C coding upstream 92371 1569308 ~ 1571802 (-)
CI01000113_01589305_01600983 NA coding upstream 112187 1589154 ~ 1601012 (-)
G332587 NA non-coding downstream 49973 1407820 ~ 1408432 (-)
CI01000113_01252186_01255334 NA non-coding downstream 202995 1252186 ~ 1255410 (-)
G332523 NA non-coding downstream 211832 1246293 ~ 1246573 (-)
G332574 NA non-coding downstream 218449 1239671 ~ 1239956 (-)
G332524 NA non-coding downstream 339858 1117811 ~ 1118547 (-)
G332596 NA non-coding upstream 66267 1543234 ~ 1543454 (-)
G332597 NA non-coding upstream 67223 1544190 ~ 1544419 (-)
G332598 NA non-coding upstream 68399 1545366 ~ 1545584 (-)
G332599 NA non-coding upstream 69036 1546003 ~ 1546223 (-)
G332600 NA non-coding upstream 69450 1546417 ~ 1546764 (-)
G332160 NA other downstream 1011568 390227 ~ 446837 (-)
G332210 NA other downstream 1408920 47990 ~ 49485 (-)
G332649 NA other upstream 670247 2147214 ~ 2148558 (-)
G332837 NA other upstream 773878 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 890649 2356565 ~ 2370009 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025749 gmip coding NC_007114.7 CM002887.2 52737565 ~ 52801302 (+)
bowfin (Amia calva) AMCG00008570 NA coding CM030126.1 CM030126.1 4238584 ~ 4250756 (-)