RNA id: CI01000113_01458405_01476967.mRNA


Basic Information

Item Value
RNA id CI01000113_01458405_01476967.mRNA
length 2437
RNA type mRNA
GC content 0.53
exon number 17
gene id CI01000113_01458405_01476967
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1458405 ~ 1476967 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCAGGATGCCGACCTGACCCTCTGTCGCTGCGAGGGTGGCGTGGAGCTTGCCCTGCAGTACGCCAAAATGTGGTGCCGTTATGCCAAAGACCTGCTGACCTGGATGGACAAAAGAATCAGCCTGGAGCAAGAGTTTGCAAAGAGTATTATGAGAGCAGCAGATGCAGCCAAGTCATGTGTTGCTCAACAGTCCACGTTAATGCTGTTAAATCTGTTCGGACACACTCCACAGGACATGATGCCTCTGCAGTATATCTACACCCTGGCCCTGGAAAATGATCTCAAAAGCAGCACATCAGCCAAACAAACTGCTGAACTCATACAACAGCGCTGCTACCAGGCTCTCTCAGCTAAGAAGAACGAAATCGACAAATGGCGACGGGAATTCAAAGAGCAGTGGTCAAAAGAACAGAAGAGGATGAACGATGCTGTGTCTGCACTGAAGAGGGCACGACAGCAATACCTGCAGCGCTGTGAGGAGCTGGAGAAGGCCAAAGCCATGACGGCCAAAGCCGAAGAGGAGACAGGGGGTAACAAGACCCTGGACAAGCGGAGGAAGTCCAGAGATGACGCCCAAACTAAGGTTACAGAGACTGAGACGCTGTACAAGCAGTGTGTGTCTGATGCAAACAACCATCAAAAAGAGCTGGAGAAGGTGAAGCGCAAAATCATTGTCCACATCCGCAAGCTCATCTGTCAAGGAGACACTGTGCTGAAAGAGGCAACGGTGAACATGTTCTATTACCAGCGGCAGCAGACTGAGCCGGTTCCTCTGGCCTACCAGAACTTGGAGCTGACCTGCAGGCCCTGTGAGCCAGGTGAACCCTACCTGCAGTACATCCTGGGAAAAGGCATGCCCGACCAGCCTCTCCAGAACTTCATGTTCCAGGAGTTCATCCCCCAAAGCAGGAGATCCCCACAAACAGGTCGGCGTAAACAAAGCACTGCTCTGAGTTACCAACAAGATTTTTATGCGCTACCAGATGATCTGAAACACAGCAGCAGTTTAGTAGATGGCCGACGGCCTGGCCACAGTGACCGAGACAGCACAGGAGGAAGTCTTGAATCACTGTCCAGTCCAGCTCATGGGAGCCGTAAGCTGCCCAAGGCCTCCTCCACAGGAACCATGTCTTCAGATGATCTTGATGAGAACGTTCTGCAAGAAGCAGAGAGCGAAGAGGGTTTATCTGATAGCAACGGAATGTCATGCAAACCACGAGCTGCATCACGTGCCGCCTTGACCCACAGACTGAGAAAAATGAAGAGCAAGATGGTCAAGTGTAAGCAATGTGACAACTACATCCTGGTCAACGGGATTGAGTGTGAGGAGTGTGGCCTTGCAGTCCACAGGAAGTGCCTGGAGGTGTGCCAGATGGAGTGTGAGCACAGGAGGGGATTCATCTTTGGGATGGAGTTCTCCCTGCTGCCCAGAGAGATCCCAGACTCTGTGCCCTTCGTTGTCCTGCGCTGCACCGAAGAGATTGAGAACAGGGCTCTTGGAGTCCAGGGAGTGTACAGAATCAGTGGCTCCAAACCTCGCATTCTGAAGTTATGTCAGGCCTTTGAAATCCAGAAAGACCAAGTTGACCTTAGTGACCTCTCACCGCATGACATCACCTCCGTACTCAAGCACTTCTTCAAAGAGCTTCCAGAGCCGTTACTCACCTTCGACCTTTACAACGAATTCATCAACGCGGGTAAGGAGATTCAGAGGCTTAGTGAAAAGGACAATGCTGCCGAAACTGTAGGGATTGTGGAGAGTATTGTGGTCAAACTCAGAGAGCTAACTGGTCGATTGCCTCTGTGTAACTACAACACAGTGCAGCACATGATGGCCCACTTGAACAGGGTGGCAGAACAATACGAAGACAACAAAATGTCTCCAGGAAACCTGGGCATCGTGTTTGGCCCCACACTCCTGCGGCCCCTGGTGTCGGGGGACGTGTCGATGATCGCTCTTCTGGAAACCAGCTATCAGGCTCTTCTCGTGGAGTTCATGATCTCACACTATGACCAAGTATTCGGCTCCGCAACAAGATCCAGCACACCTCCGCCACCGCCTCCCACGGCACCCCTCCCAGACACCCCACCCAGAGCGACATGTCCCGTTTCTCCTGCCAGCAGTTCCTCACAGGACCCCGGAGCCGCGTCCAGGGAACGTCCACGCTCACTGGAGAATCGCACTATCAAGAGAGATTCAAGCGAGGGTTATATTTCTGACAAGTCATCATCCAATGAAGCAATGGACCAGCTGAGCCCAGAAGCCAATGAGAGAGCAGTCCTGGCTATGAGGGCGACAGCATCTCCTCAGGGGCATCTGGAGCAGGCTGCAGAAAGTCAACTACAAACTCAGTCGAGGGGTCACTTCAGCAGGCAGCCAGTCAAGTATTACCGACAGGGTTCGGCAGGAGCACAATTACGCAAAGCAGGCTCTCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K20653 GMIP, ARHGAP46; GEM interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378108 lncRNA downstream 49973 1407820 ~ 1408432 (-) True G332587
TU378000 lncRNA downstream 202995 1253733 ~ 1254272 (-) True G332488
TU377999 lncRNA downstream 202995 1253898 ~ 1254272 (-) True G332488
TU378042 lncRNA downstream 211832 1246293 ~ 1246573 (-) True G332523
TU378095 lncRNA downstream 218449 1239671 ~ 1239956 (-) True G332574
TU378118 lncRNA upstream 66267 1543234 ~ 1543454 (-) True G332596
TU378119 lncRNA upstream 67223 1544190 ~ 1544419 (-) True G332597
TU378120 lncRNA upstream 68399 1545366 ~ 1545584 (-) True G332598
TU378121 lncRNA upstream 69036 1546003 ~ 1546223 (-) True G332599
TU378122 lncRNA upstream 69450 1546417 ~ 1546764 (-) True G332600
CI01000113_01432095_01456239.mRNA mRNA downstream 2166 1431986 ~ 1456239 (-) True CI01000113_01432095_01456239
CI01000113_01404787_01423732.mRNA mRNA downstream 34673 1404666 ~ 1423732 (-) True CI01000113_01404787_01423732
CI01000113_01396970_01402406.mRNA mRNA downstream 55999 1396431 ~ 1402406 (-) True CI01000113_01396970_01402406
CI01000113_01351820_01359750.mRNA mRNA downstream 96747 1351412 ~ 1361658 (-) True CI01000113_01351820_01359750
CI01000113_01259501_01275141.mRNA mRNA downstream 183264 1259138 ~ 1275141 (-) True CI01000113_01259501_01275141
CI01000113_01480199_01500090.mRNA mRNA upstream 2510 1479477 ~ 1500271 (-) True CI01000113_01480199_01500090
CI01000113_01502427_01506373.mRNA mRNA upstream 25194 1502161 ~ 1506373 (-) True CI01000113_01502427_01506373
CI01000113_01554726_01565897.mRNA mRNA upstream 77177 1554144 ~ 1565897 (-) True CI01000113_01554726_01565897
CI01000113_01569971_01571224.mRNA mRNA upstream 92371 1569338 ~ 1571802 (-) False CI01000113_01569971_01571224
CI01000113_01589305_01600983.mRNA mRNA upstream 112187 1589154 ~ 1601012 (-) True CI01000113_01589305_01600983
TU377621 other downstream 1011568 390227 ~ 446837 (-) True G332160
TU377671 other downstream 1408920 47990 ~ 49485 (-) False G332210
TU378176 other upstream 670247 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 773878 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 890649 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050617 True 3037 mRNA 0.52 18 NC_007114.7 52753416 ~ 52801106 (+)
bowfin (Amia calva) AMCG00008570 True 2781 mRNA 0.57 17 CM030126.1 4238584 ~ 4250756 (-)