CI01000113_01554726_01565897 (SLC27A1A, SLC27A1)


Basic Information

Item Value
gene id CI01000113_01554726_01565897
gene name SLC27A1A, SLC27A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1554144 ~ 1565897 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_01554726_01565897.mRNA
GATGCACTATGTGGCGAGTGGTTCCCTGTCCTTCAGTTCTCTGGGCCTGCTCCGTCTGTTTGGGGCATCTTGGTCCTGGAGCCTTGCAGCAGGTCTGGGTGTTTACTTAGGAACAGGAGGCTGGCGGTACCTGTATGTGGTTGTTCGTACGGCTAAAAGGGACCTCAATGGTCTTTATGTGCTGCTGAGGGTTAAACTGGCGCTATGGCATCATATCCGTCACCGAAACACCATACCCTCCATCTTTGCACAAACCGTGGCTCAACACCCAGACAAGCCTGCGCTCGTGTATGAAGCCACTGGAGAAACATGGACTTTTTGCCAGTTAGATCAGATCTCCAATGCTGTGGCCCATTGGGCACTGAGCCAGGGCTGGACCTCAGGAGATGTGGTGGCACTCTTCATGGAGAGCCGGCCGCTCCAAGTGGCGCTCTGGCTTGGCCTGGCCAAAGTAGGTGTGGAGGCTGCGCTCATTAACTTCAACCTCCGACGGGATTCGCTCCTGCACTGCGTGGGTGTGTCAGCATCCCGAGGGATGGTGTTTGGAGCAGAGCTAGCAGATGCCGTGTCTGAAGTGAGCTCCTCCTTGAGTGAGACCATGGTGCGGTTCAGCACGGGAGACCTCAGACCAGACCAGATGGCTGCTCTGAAATGTCAGCCCCTTGACTCCATTCTGGCATCTGCCCCTCGACACCCACCATCTACCATTGTGTCCAAGGGCTTCAATGATCGTTTGTTCTATATCTACACTTCTGGCACCACGGGACTCCCTAAAGCTGCTATAGTGGTGCACAGCCGATATTACAGGATTGCTGCTTTCGGGTACCATTCTTTCCGTATGCGGCCAGACGATATCATCTATGACTGTTTACCCCTCTACCACTCAGCAGGTAATATTATGGGTGTGGGCCAGTGTCTGATTCACGGTATAACTGTGGTGGTCAAGAAGAAGTTCTCAGCAAGCCGCTTCTGGGAAGACTGTATCAAACATAACTGCACTGTTGTGCAGTACATAGGCGAGATTTGCCGTTACTTGCTGTCCCAGCCTGTGCGGCCCTCGGAGCGACAGCACCGGGTGCGTTTAGCTGTGGGGAACGGGCTGCGGCCGAGCGTGTGGGAGGCTTTCATGGAACGCTTTGGAGTGAAACAGATTGGCGAGTTCTATGGAGCCACCGAGTGCAACTGCAGCATTGCCAATATGGATGGCAAGGTTGGTGCTTGTGGGTTTAACAGTCGCATTCTGCCTAATGTGTACCCCATCCGACTGGTGAAAGTGAACGAGGAAACCATGGAACTGGTTCGAGACAAGCAGGGACTGTGTGTGCCTTGCCGACCTGGAGAGCCTGGGCTCTTGGTGGGGAGAATTAATCAGCAGGATCCTCTGCGTCGGTTTGATGGGTATGCTAGTCAGGATGCCACCAGGAAGAAGATCGCCTACAATGTATTCAGGAAAAATGACTCAGCATATCTGTCAGGTGATGTTTTAGTTATGGATGAGCTTGGATACATGTACTTCCGGGACAGGAGTGGTGACACGTTTCGTTGGAAAGGTGAGAACGTCTCCACTACTGAAGTGGAGGGAACACTGAGCAGCCTGTTGGGACAGACTGATGTAGCAGTGTTTGGAGTAAACGTGCCAGGAACATTTAAAATTCAGAAGACCAGATTGCAGAGGGAAGGATACGATCCACGGCTCACAACTGACCAGATCTACTTTCTGAACTCCAGAGCAGGCCGTTATGAGCTTGTGAACGAGGAGCTGTACAATGCTTTTGAAGAAGGAAGGATATCCCTTTGAGACGAAGAAGAGAAGGTAGTCTGAACCTACCTGGTCATCTTCTAACCTGTGACCGTGTGCAGTGTAACCGCAATACTGCAACAGGAACCACTCAGATTAGTTCTGCTAGTATGTAGACACTTTTTTTGCATTTACATTTTTCAAATTTATAGTATTGCATTTGAAGAGGTTTCTTCGATTTGATAGCCTACTAGAAAGCACAAGCTGTGTCTTGACAATGACAAACTGAATATCTGATATGCAATAGATGAAACAGTAAGAGTGAATTGTTCTTTTAATGTGTTATTCTTAGTTGATGGTAGTGCACGGGTGACAATACATGTGCACTCCCAATTTAACAACAACAACACAACCTCTAAAGCCAACTGGATGAAAGATGAAACTCCACTAGGATGTCTGGCTTTGACACTAGACCTATACCATTACAAACCAGCTAGTTAAATACATTTTGAGCCTGAACGATGATGATTAGTGTACGTTAACAAGATTTTTACTACATAAACATTGTTAAAATGCCTAACTCCAAAGTGACTTTTAGAAAGCTGAAAGATACAGAGTGTCTTTGTAAACAGCCACAATAAA

Function

symbol description
slc27a1a Predicted to enable fatty acid transmembrane transporter activity; long-chain fatty acid transporter activity; and long-chain fatty acid-CoA ligase activity. Predicted to be involved in several processes, including glycerophospholipid biosynthetic process; lipid transport; and regulation of phosphate metabolic process. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Predicted to colocalize with mitochondrial inner membrane. Orthologous to human SLC27A1 (solute carrier family 27 member 1).
slc27a1 Enables biotin transmembrane transporter activity; efflux transmembrane transporter activity; and long-chain fatty acid transporter activity. Involved in several processes, including carboxylic acid transmembrane transport; glycerophospholipid biosynthetic process; and lipid transport across blood-brain barrier. Located in membrane. Part of plasma membrane.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08745 SLC27A1_4, FATP1_4; solute carrier family 27 (fatty acid transporter), member 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_01554726_01565897.mRNA True 2380 mRNA 0.49 11 1554144 1565897

Neighbor

gene id symbol gene type direction distance location
CI01000113_01502427_01506373 NA coding downstream 47771 1502161 ~ 1506373 (-)
CI01000113_01480199_01500090 COLGALT1 coding downstream 53873 1479477 ~ 1500271 (-)
CI01000113_01458405_01476967 GMIP coding downstream 77177 1458405 ~ 1476967 (-)
CI01000113_01432095_01456239 LMX1AL coding downstream 97905 1431986 ~ 1456239 (-)
CI01000113_01404787_01423732 ATP13A1 coding downstream 130412 1404666 ~ 1423732 (-)
CI01000113_01569971_01571224 PTGER1C coding upstream 3441 1569308 ~ 1571802 (-)
CI01000113_01589305_01600983 NA coding upstream 23257 1589154 ~ 1601012 (-)
CI01000113_01652528_01653349 NA coding upstream 86489 1652386 ~ 1653446 (-)
CI01000113_01846674_01851715 BTBD17B coding upstream 280471 1846368 ~ 1851790 (-)
CI01000113_01854931_01857730 NA coding upstream 288869 1854766 ~ 1858875 (-)
G332601 NA non-coding downstream 6609 1547128 ~ 1547535 (-)
G332600 NA non-coding downstream 7380 1546417 ~ 1546764 (-)
G332599 NA non-coding downstream 7921 1546003 ~ 1546223 (-)
G332598 NA non-coding downstream 8560 1545366 ~ 1545584 (-)
G332597 NA non-coding downstream 9725 1544190 ~ 1544419 (-)
G332611 NA non-coding upstream 20129 1586026 ~ 1586275 (-)
G332621 NA non-coding upstream 79103 1645000 ~ 1645350 (-)
G332622 NA non-coding upstream 92828 1658725 ~ 1658938 (-)
G332623 NA non-coding upstream 96859 1662756 ~ 1662984 (-)
G332160 NA other downstream 1107307 390227 ~ 446837 (-)
G332210 NA other downstream 1504659 47990 ~ 49485 (-)
G332649 NA other upstream 581317 2147214 ~ 2148558 (-)
G332837 NA other upstream 684948 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 801719 2356565 ~ 2370009 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location