G332601


Basic Information

Item Value
gene id G332601
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1547128 ~ 1547535 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU378123
TCGTGTGAAGCTTCATTTAAGGGATATAACCTGTGACCCTGGTGGTTGGCTGACGACTTGCATTTGCTACAAGTGGGTTCCAGGTCCTCCAAACAAAAAAGCGTCAAGGTCTCACCATGCTCCTTGCATGCAAGTGGATCATTTTTGCAGCGCTCCAGAAAGCCCTCGCAGGTCTTCTCAAGCATGGTGTTGACTATGAGCTCCCCCATAGATGACGGCTGACAGCAAAGAGGGCATTCGCAAGATCCTCCACCATTCCACAGGTTCTCCAGACAAAGTTTGCAAAAGCGATGTCTGCAAAACAGCACTACCGGCTTTTGCAGGATACTTCCACAGATGGGGCACGACAGGTCGTCTGCAAGATGTGATCGCTTAGTGGCCATTGCTCCTTTGAGCCTTTCATTGCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU378123 True 408 lncRNA 0.50 1 1547128 1547535

Neighbor

gene id symbol gene type direction distance location
CI01000113_01502427_01506373 NA coding downstream 40755 1502161 ~ 1506373 (-)
CI01000113_01480199_01500090 COLGALT1 coding downstream 46857 1479477 ~ 1500271 (-)
CI01000113_01458405_01476967 GMIP coding downstream 70161 1458405 ~ 1476967 (-)
CI01000113_01432095_01456239 LMX1AL coding downstream 90889 1431986 ~ 1456239 (-)
CI01000113_01404787_01423732 ATP13A1 coding downstream 123396 1404666 ~ 1423732 (-)
CI01000113_01554726_01565897 SLC27A1A, SLC27A1 coding upstream 6609 1554144 ~ 1565897 (-)
CI01000113_01569971_01571224 PTGER1C coding upstream 21803 1569308 ~ 1571802 (-)
CI01000113_01589305_01600983 NA coding upstream 41619 1589154 ~ 1601012 (-)
CI01000113_01652528_01653349 NA coding upstream 104851 1652386 ~ 1653446 (-)
CI01000113_01846674_01851715 BTBD17B coding upstream 298833 1846368 ~ 1851790 (-)
G332600 NA non-coding downstream 364 1546417 ~ 1546764 (-)
G332599 NA non-coding downstream 905 1546003 ~ 1546223 (-)
G332598 NA non-coding downstream 1544 1545366 ~ 1545584 (-)
G332597 NA non-coding downstream 2709 1544190 ~ 1544419 (-)
G332596 NA non-coding downstream 3674 1543234 ~ 1543454 (-)
G332611 NA non-coding upstream 38491 1586026 ~ 1586275 (-)
G332621 NA non-coding upstream 97465 1645000 ~ 1645350 (-)
G332622 NA non-coding upstream 111190 1658725 ~ 1658938 (-)
G332623 NA non-coding upstream 115221 1662756 ~ 1662984 (-)
G332160 NA other downstream 1100291 390227 ~ 446837 (-)
G332210 NA other downstream 1497643 47990 ~ 49485 (-)
G332649 NA other upstream 599679 2147214 ~ 2148558 (-)
G332837 NA other upstream 703310 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 820081 2356565 ~ 2370009 (-)

Expression


Co-expression Network