CI01000113_01404787_01423732 (ATP13A1)


Basic Information

Item Value
gene id CI01000113_01404787_01423732
gene name ATP13A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1404666 ~ 1423732 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_01404787_01423732.mRNA
ATGGATGAAGCTAAAAAAGAGGGGAATATGGCCGCAGACGCCGTTAATGGGCCGGGGGGGACGCAGACTCGCGCACCGAGCGATGAGCTGGTGAGATCAGTGTCTCTCCACAGCCGCAGGTCACGCGTTCTGCACGGTACGGTGTTCCCGTTTCTCTTCCTCTACCCACTCTGCTTATATACGTGGTTTGGAGTTTACGGGGCTTCCGAGTATGTTGAGGCCGGCCTGCTGGCGCTCGCCGCTCTTGGGATCGCGCACGTCCTGACAGTGCTTTCTGGCTACTGGTCCGTGCACGCGCACTGCTGGCTCACCTGCTCAAAGGAGTCTGATCCAGCCAAAGCCACATTTGCAAAAGTTATACCAACACCCAACAATGGTTCAGCTGAATTAGTGCCTCTTCTGAGGGATAAGAATGAGGATGGAACGGAAAGCCTGTCCTTTGAGTTCCAGAAGATCCGTTATGTGTACGACAGCAAGGAGAAGAAGCGCTTTCTGCAGGTGGCATTTCCGATCAACGTTCCCATGAGTCATTTCCAGAATTGGAGAGGTTATCAGGAGGAGGCTCAGCTACAGGCTGCAGAGAAGAGCTACGGCACCAACCGCGCAGAGATGGTGGTGCCGGACTTCCTGGAGCTCTTCAAGGAGAGAGCCACAGCTCCCTTCTTTGTCTTCCAGGTGTTTTGTGTGGGTCTGTGGTGTTTGGATGAGTACTGGTACTACAGCGTCTTTACGCTCTTCATGCTTGTGGCGTTTGAAGCCTCTCTGGTGCAGCAGCAGATGAGGAACATGTCAGAAATCCGCAGAATGGGGAACAAACCTTACATGATCCAGGTCTATCGGAACAGAAAATGGAGGCCTGTATCCAGTGATGAACTAGTCCCTGGAGACATTGTCTCAGTTGGACGGTCTCCTCAGGATAACCTGGTTCCCTGTGATGTGCTGCTACTGAGAGGCCGCTGTATTGTAGACGAGGCCATGCTCACAGGAGAGTCTGTGCCTCAGATGAAGGAGCCTGTAGAAGATCTAGACCCTGACAGGATCCTGGACCTGCAGACAGACTCCCGACTTCATGTCATCTCAGGTGGCACCAAAGTGGTTCAGCACAGCCCGCCTCTCCGAACCACTGCTGGACTGAAACCTGTAGACAATGGCTGTGTGGCTTATGTTTTGCGGACTGGATTCTACACTTCTCAGGGCAAATTGTTGAGAACGATTCTGTTTGGTGTGAAGAGGGTAACGGCCAACAACCTGGAGACCTTTATCTTCATCCTTTTCTTGTTGGTTTTTGCCATTGCAGCAGCTGTGTATGTTTGGGTCGAGGGGACGAAAGACCCGAGCAGAAACAAGTATAAGCTGTTTCTGGAGTGTACTCTGATTCTCACGTCAGTAGTACCTCCTGAATTACCCATAGAGCTCTCACTGGCTGTTAACACATCTCTCATAGCGCTGGCCAAACTCTATGTGTTTTGCACAGAACCTTTCAGGATTCCCTTTGCTGGGAAAGTGGAGATTTGCTGTTTCGACAAGACTGGCACCCTGACAAGCGACAGCCTGGTTGTTCGTGGTGTTGCGGGGCTCAGAGATGGGAAACAAGTGACGCCCGTGTCAGAGATACCAGTGGACACTCATCGGGTGGTGGCTACGTGTCATTCGCTGGTCACGCTAGATGATGGGCAGCTGGTGGGTGATCCGCTGGAGAAGGCCATGCTGACAGCAGCAGACTGGACGCTCACTAAAGATGAGAAGGTGTTTCCTCGTGGCATAAAGACTCCAGGGCTGAAGATCCATCAGAGGTTTCATTTCGCTAGTGCTCTGAAGAGGATGTCAGTGCTGGCGTCATATGAGCGAATGGGCTCCTCTGAGCTCTGCTATATCTCAACTGTTAAAGGTGCACCTGAGACCCTGAAGGACATGTTCTGCGAGTGTCCAGCCAGCTATGACGAGGTGCACAGAGAGATGTCACGGGAGGGAGCGAGAGTTCTTGCACTGGGATACAAAGAGATGGGCCATCTGAGCCATCAGCAGGTGAGGGAGCTGAGCCGTGAGGTGCTGGAGTGTGACCTGCACTTCGCAGGGTTCATGGTCGTGTCCTGTCCTCTCAAGACCGACAGCAAAGCAGTCATCAGAGAGATACAAGAGGCCTCACACCATGTTGTAATGATCACAGGTGACAACCCTCTAACTGCGTGTCATGTGGCCAGAGAGCTGCATTTCATCCAGAAAGAGCACACACTCGTACTACAGCCAGGCCCCAATCAAGCTGAATGGCAGTGGGTGTCCATAGACGGCACCGTGTGCCTCCCTCTACCTCCTTCCTCAGTCTCAGATTTGGTCAGGCGGTACAACCTCTGTGTGACAGGAGAGGGGCTGACCAGGTTGACCTATGAACCCCGTTTACTCCACGCCCTGCTTCCTCATGTGCGAGTGTTTGCTCGTGTCAGCCCCAAACAGAAGGAGTTTGTCATAACTAGTCTAAAGGGACTGGGTTTCGTTACGCTGATGTGTGGAGATGGCACGAATGATGTGGGTGCGCTCAAACATGCCCACATTGGTGTGGCCTTGTTGGCTAACGCCCCAGAGCGCATGCCTGAGAAAAAGAAGAAAAGCAAAGACAAAGAGTACTCCTCTGGAGAGCCCAGACCTGGACCACCAGTCCCGAGTTCAGGGGTCAAACTCAGCTCCCGTGCAGCCAGACAGAGATTAATGGCCCAGAGAGAGGAGCAGCTAGCTGCACAAAAGGAGAGGATCAGTCAGGTACTGCGAGAGTTAGAAGAAGATCAGATTCAGGTGGTTAAACTGGGCGACGCCTCCATTGCTGCTCCATTCACCTCTAAACTCTCCTCCATACAGTGCATCTGTCACGTGATTAAACAGGGTCGCTGCACTCTGGTGACCACCCTGCAGATGTTTAAGATCCTGGCGCTGAACGCTCTGGTTCTGGCCTACAGTCAGTCTGTGCTCTACCTAGAGGGGGTCAAATTCAGCGACTTCCAGGCGACCCTTCAGGGCCTGCTGCTGGCCGGCTGCTTTCTTTTCATCTCAAGGTCAAAGCCTTTGAAGACGCTGTCCAAAGAGCGGCCTTTACCTAACATCTTCAACCTGTACACTGTCCTCACAGTGCTGCTGCAGTTTGCAGTTCACTTCTGCAGTCTGGTGTACCTGTACAGGGGGGCACAGAGCAGAAGCCCACCCAGGGCAGAGCGGTTTGTGGACTTGTACAAAGAGTTTGAGCCCAGTCTCATTAACAGTACTGTATACATCATGTCCATGGCCATGCAAATGGCCACATTTGCCATTAATTATAAGGGTCATCCGTTCATGGAGTCTCTCACCGAGAACCGGCCCTTGCTGTGGAGCATCGCTATATCAGGGCTCGCCATAGTAGGGCTGCTGACGGGATCTTCACCTGAATTCAATGAGCAGTTTGCCTTAGTGGATATTCCGACTGAGGTATGAATTCAGTACACCACGCTATTCACAAACTATTACTTACTAGAATGTTTATGGAAAAGTTTATATTTTAAGCGTGCAGTATGTCATTACATCAGTATTGTCACATACTAGTATTGTGATTAAA

Function

symbol description
atp13a1 Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and metal ion binding activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to act upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP13A1 (ATPase 13A1).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14950 ATP13A1, SPF1; manganese-transporting P-type ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_01404787_01423732.mRNA True 3577 mRNA 0.52 24 1404666 1423732

Neighbor

gene id symbol gene type direction distance location
CI01000113_01396970_01402406 NA coding downstream 2260 1396431 ~ 1402406 (-)
CI01000113_01351820_01359750 PBX3, PBX1 coding downstream 43008 1351412 ~ 1361658 (-)
CI01000113_01259501_01275141 BRD4, BRD2, BRD3 coding downstream 129525 1259138 ~ 1275141 (-)
CI01000113_01252186_01255334 NA coding downstream 149332 1252186 ~ 1255410 (-)
CI01000113_01208541_01221483 STXBP2 coding downstream 182583 1207889 ~ 1222083 (-)
CI01000113_01432095_01456239 LMX1AL coding upstream 8254 1431986 ~ 1456239 (-)
CI01000113_01458405_01476967 GMIP coding upstream 34673 1458405 ~ 1476967 (-)
CI01000113_01480199_01500090 COLGALT1 coding upstream 55745 1479477 ~ 1500271 (-)
CI01000113_01502427_01506373 NA coding upstream 78429 1502161 ~ 1506373 (-)
CI01000113_01554726_01565897 SLC27A1A, SLC27A1 coding upstream 130412 1554144 ~ 1565897 (-)
G332523 NA non-coding downstream 158093 1246293 ~ 1246573 (-)
G332574 NA non-coding downstream 164710 1239671 ~ 1239956 (-)
G332524 NA non-coding downstream 286119 1117811 ~ 1118547 (-)
G332458 NA non-coding downstream 427143 977300 ~ 977523 (-)
G332596 NA non-coding upstream 119502 1543234 ~ 1543454 (-)
G332597 NA non-coding upstream 120458 1544190 ~ 1544419 (-)
G332598 NA non-coding upstream 121634 1545366 ~ 1545584 (-)
G332599 NA non-coding upstream 122271 1546003 ~ 1546223 (-)
G332600 NA non-coding upstream 122685 1546417 ~ 1546764 (-)
G332160 NA other downstream 957829 390227 ~ 446837 (-)
G332210 NA other downstream 1355181 47990 ~ 49485 (-)
G332649 NA other upstream 723482 2147214 ~ 2148558 (-)
G332837 NA other upstream 827113 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 943884 2356565 ~ 2370009 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025752 atp13a1 coding NC_007114.7 CM002887.2 52899801 ~ 52952026 (+)
bowfin (Amia calva) AMCG00008418 atp13a1 coding CM030126.1 CM030126.1 785426 ~ 799063 (+)