AMCG00008418 (atp13a1)


Basic Information

Item Value
gene id AMCG00008418
gene name atp13a1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 785426 ~ 799063 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008418
agagagagagagagagagagagagggggcagcGTGCGTGTGTGCGGGGGAGACAGGGACGGGCAGCTCGTATCTGTGCGCGACCAGCAGCTGCGAGGACGGGCGGCGGAGACCCAGACGGACGGCCGGAATGGCAGAAGGAAATATGGCCACGGACGGACAGGGGAGGCCGGGGAAGGCGCCCGAATCCGCCGAGAACGACATCTCTACCACGGCAGACAGCGTCCCGGGGACCCAGGGTGCCACGGACGAGCTGGTGAGCTCCGTGTCGCTGTACCGGCGGCGGCCCAGGCTGCTGCACGGGACGGTACTGCCGTTCGTGGGGCTGCTGTACCCGGCGTGGCTGTACCTGTGGCTGGCCGTGTACGGCGCCGCTGACTACCCGGAGGCCGGCATGATCGCGCTCGCTGCCATCGGGATCGCGCACGTCCTCACCGCGCTCTCGGGACACTGGTCCGTGCACGCGCACTGCTGGCTCACCTGCGCCAAGGAGCCGGACCCTACGAAGGCCTCTCTGGTGAAGGTCGTCCCGATGCCCAACAATGGCTCAGCAGAGCTGCTGCCACTGCAGAGAGACACGGACGAGGCCGGGTTCGAGGTGATCTCGTTCGAGTTCCAGAAGATCCGTTACATCCTGGAGGGGGGCCGCTTTGCCCCCGTGTCCTTCCCTGTCGCACGGCCGCTCGGCTTCTTCCAGGGCTGGAAGGGCTACCAGGAGGAGGCGGAGCTGCGGGCGGCGAAGAAGACATACGGAGGCAACAGGGCAGAGATGGTGGTGCCGGAGTTCCTGGAGCTGTTCAAGGAGAGAGCCACTGCCCCCTTCTTCGTCTTCCAGGTGTTCTGTGTGGGGCTGTGGTGTCTGGACGAGTACTGGTACTACAGCGTGTTCACCCTGTTCATGCTGGTGGCCTTTGAGGCGTCGCTGGTGCAGCAGCAGATGAGAAACATGTCTGAGATCCGCAGGATGGGCAACAAGCCGTACATGATCCAGGTGTacaggaacaggaagtggaggCCGGTGTCCAGCGATGAACTGGTCCCCGGGGACATAGTCTCTGTAGGCCGCTCCCCACAGGAGAACCTGGTGCCGTGTGACGTGTTGCTGCTGCGTGGCCGCTGCATCGTGGACGAGGCAATGCTGACCGGAGAGTCCGTCCCTCAGATGAAGGAGCCCGTGGAAGACCTGTCTCCGGACCATGTGCTGGACCTGCAGCTGGACTCGCGGCTCCACGTGATCTCTGGCGGAACCAAGGTGGTCCAGCACAGCCCGCCCCACCGCGCCTCCGCCGGCCTCAAGCTGGTTCCCCCAGAGCTGCCCATCGAGCTCTCGCTGGCCGTCAACACCTCCCTCATCGCCCTGGCCAAGCTCTACGTGTTCTGTACAGAGCCGTTCCGGATCCCGTTTGCGGGGAAGGTGGAGGTCTGCTGCTTCGACAAGACTGGCACCCTGACCAGTGACAGTCTGGTGGTGCGCGGAGTGGCCGGCCTCAGGGAGGGGAAGGAGCTGACCCCTGTGTCTGAGATCCCCGTGGAAACGCACCGCGTCGTGGCGACCTGTCACTCTCTGGTCACCATGGACGATGGGCAGCTGGTGGGAGACCCGCTGGAGAAGGCCATGCTGACTGCAGCGGACTGGAGCCTGACCAGGGatGAGAAGGTGTTCTCCTGCAGCTTTAAGACCCAGGGGCTGAAGATCCACCAGCGCTTCCACTTCGCCAGCGCTCTGAAGCGCATGTGCGGGAGGTGTCCAGGGAGGCGCTGGAGTGCTCTCTGCAacGCTCCCTGGCAGTGGGTGTCTATCGACGGCTCCGTGTCACTGCCCATGCCGCCGCCCTCGCTGCCAAGCCTGGTGTCCCAGTACGACCTGTGTGTGACCGGGGAGGGCCTGACCTGGCTGAGCCTTGACCCCCAGCTCCTGAACGGCCTGCTGCCGCACATCCGTGTGTTCGCCCGGGTCAGCCCCAAGCAAAAGGAGCTGGTGGTCACCAGTCTGAAGGGGCTGGGCTTCGTGACCTTGATGTGTGGGGACGGCACCAATGATGTCGGAGCGCTGAAACACGCCCACATCGgtgtggCCCTGCTGGCCAACGCCCCAGAGCGCATGCCAGAGAGGAGGAGGCGAGTGAGGGAGAGCAGGGAGCCCCCCCCCAGCGAGCCGCGGCCCCCGCCCCTCCCCGGCGGGAAGCTGAGCTCCAGGGGGGCGAGGAACAGGGTGCTGGCGCACAGAGAGGAGCAGCTGGCCGCGCAGAAGGAGCGGATCAGCCAGGTGctgaaggagctggaggaggaccAGGTGCAGGTGGTCAAACTGGGAGACGCCTCCATCGCCGCCCCCTTCACTTCCAAACTGTCCTCCATACAGTGCATCTGCCACGTGATCAAGCAGGGCCGCTGCACGCTGGTCACCACGCTGCAGATGTTCAAGATCCTGGCCCTGAATGCGCTGGTGCTCGCCTACAGCCAGAGCGTGCTGTACCTGGAGGGCGTCAAGTTCAGCGACTTCCAGGCCACCCTGCAGGGCCTGCTGCTGGCCGGCTGCTTCCTCTTCATCTCGCGCTCCAagccTCTGAAGACCCTGTCCCAGGAGCGCCCCCTGCCCAACATCTTCAACCTGTACACAGTGCTCACAGTGTTGCTGCAGTTCCTCGTGCATTTCTGCAGCCTGGTGTATCTCACTGTGTACATCATGTCCATGGCCATGCAGATGGCCACCTTCGCCATCAACTACAAGggtcaTCCGTTCATGGAGTCTCTGTGGGAGAACCGGCCGCTGCTGTGGAGTCTGGTTCTGTCAGGTCTGGCCATCGCCGGGTTGCTCTCCGGCTCCTCCCCCGACTTCAACCAGCAGTTCGCGCTGGTGGACATCCCCTCAGAGTTCAAGCTGGTGATTGGACAGGTCTTGGTGCTGGACTTCTGTGCCGCCCTGCTGGTGGACcggctgctgcagctgctgctgggGAGGGGCTCCTTGAAACTGCCCTGCTGAGGGTCCCGCGCAGACGGACCTGATCACTACAGAACAGCCGTGCCTAGCGACAGAACCCACGGAACCCCGGAACAGCGGCGGCGCCTCGCAAACACATGATGCCACAGAGGAGAGGAGtacgggggaggggggggcacaTCACAAACTGCAATGCCCCCCTGGAACTGAACAGCTGCCCCAACACCCCTCCCTCCATCGCTTTCATTTCTTTGTTCCGTTTCTCATTCCTTCCGTCTCCcgccctctctgtccctccctcgcTCGCTCTTACTCCTTCCCCTCCACTGTCacccctctctcctgctctctctctcccaacccccccccccccggcccgAGAGTGGAGTATTGTGAGAAGGGGGAGGGTGTTCACTGTAACACAGCCCCCCCGAGTGTTCAACAGAATGGGGATTTTATTACTATGATgataattaatattgttatgattgttattattgttttgtaaggacagagctgggagaggaggaggtgatAAATTATGACAACAGACTCGCACACCATCTACTGTGTTTCTCATCCCTCGTTCTGCTGCAGCGTCTTTTtcttcaacacacacacacacacactcacacacgggTAAGTGTACAGGAtagacacacagatgcaca

Function

symbol description
atp13a1 Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and metal ion binding activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to act upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP13A1 (ATPase 13A1).

NR:

description
manganese-transporting ATPase 13A1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function

KEGG:

id description
K14950 ATP13A1, SPF1; manganese-transporting P-type ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008418 True 3614 mRNA 0.63 22 785426 799063

Neighbor

gene id symbol gene type direction distance location
AMCG00008411 NA coding upstream 6995 775391 ~ 778431 (+)
AMCG00008412 NA coding upstream 65552 716095 ~ 719874 (+)
AMCG00008410 NA coding upstream 72807 709248 ~ 712619 (+)
AMCG00008403 rfx1,rfx1a,LOC108239327,LOC105013142 coding upstream 155989 609033 ~ 629437 (+)
AMCG00008402 NA coding upstream 244382 540113 ~ 541044 (+)
AMCG00008417 NA coding downstream 7696 806759 ~ 813360 (+)
AMCG00008419 pbx4,LOC103392870 coding downstream 23615 822678 ~ 843135 (+)
AMCG00008429 NA coding downstream 148594 947657 ~ 950842 (+)
AMCG00008424 NA coding downstream 177164 976227 ~ 983656 (+)
AMCG00008431 xab2 coding downstream 186914 985977 ~ 994819 (+)
G48996 NA non-coding upstream 1445 765871 ~ 783981 (+)
G48961 NA non-coding upstream 34824 748598 ~ 750602 (+)
G48947 NA non-coding upstream 89313 694468 ~ 696113 (+)
G48921 NA non-coding upstream 94389 640876 ~ 691037 (+)
G48915 NA non-coding upstream 153033 629884 ~ 632393 (+)
G49066 NA non-coding downstream 130643 929706 ~ 930827 (+)
G49069 NA non-coding downstream 134082 933145 ~ 936281 (+)
G49101 NA non-coding downstream 259498 1058561 ~ 1107290 (+)
G49102 NA non-coding downstream 264486 1063549 ~ 1068033 (+)
G49097 NA non-coding downstream 280958 1080021 ~ 1117780 (+)
G48846 NA other upstream 196980 587280 ~ 588446 (+)
G48811 NA other upstream 233520 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other upstream 260101 517499 ~ 525325 (+)
AMCG00008376 NA other upstream 522404 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 581031 153189 ~ 204395 (+)
G49013 NA other downstream 77491 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 166775 965838 ~ 968583 (+)
G49208 NA other downstream 523748 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 826231 1625294 ~ 1628333 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 1131591 1930654 ~ 1936502 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025752 atp13a1 coding NC_007114.7 CM002887.2 52899801 ~ 52952026 (+)
grasscarp (Ctenopharyngodon idella) CI01000113_01404787_01423732 ATP13A1 coding CI01000113 null 1404666 ~ 1423732 (-)