AMCG00008451 (ubl5)


Basic Information

Item Value
gene id AMCG00008451
gene name ubl5
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1625294 ~ 1628333 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008451
ATGTTGAAGGAAATCGATCCCGAAGTCCCGCCTTTTATAATGGCAGAAGCTGCTGATTGGTTCAAAGTGCCCTATCTCGCCATGATTGAAGTAGTGTGCAACGACCGTCTGGGCAAGAAAGTCAGGGTGACGAGGGGAAAAGCAAAGCTGCCGTCGCTCGGTTTCACAGACTCCGTCCACCAGTGGTCCTGCTGTGGGATATTCCTGCGCACGAGGGCCTCTGAAATCGGAGCAGGAAATCTGCCCACTGGGGACCTGGTTCTCTTCCTTAACCCCTTGACCAGATGA
>TU61523
CTTTAGTTTGTATTTCCGTATTAGCTGCGTCTACTTCCTGTTAGTGTCAGTACAGTCAAGTTGTGTTTGGATATTTTGGAAGGAATTTAAGTCTCTGAGGGGCTTTTGCCGAAGCTGAAGGTGCCCTATCTCGCCATGATTGAAGTAGTGTGCAACGACCGTCTGGGCAAGAAAGTCAGGGTGAAGTGCAACTCTGACGACACAATTGGTGACTTGAAGAAGTTGATAGCGGCTCAGACTGGAACCAGGTGGGACAAGATCGTCTTAAAGAAATGGTACACGATATTCAAGGACCACGTGTCTTTGGGGGACTATGAAATCCACGACGGCATGAACTTGGAGCTGTATTACCAGTAGAGACGAGGCCTGGGCTGTTCTGATTGCCCCGTACGCACGAGGAGAAATGCCGTCTCTTCTGACACACATGCCCCGCTCGTATCGAACTAGGAAGAGGTTTTGTCATCGTTGTTAATTTGCTTTGGTATCATGGAAAGCAgtgactatatattttttcccctcttgcattgcctattttgttttgatattgttttgaaataaaattcagTATTTATATACATC

Function

symbol description
ubl5 Predicted to enable protein tag. Involved in positive regulation of protein targeting to mitochondrion. Located in cytoplasm.

NR:

description
PREDICTED: ubiquitin-like protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008451 False 288 mRNA 0.53 4 1625294 1628071
TU61523 True 579 lncRNA 0.44 5 1625397 1628333

Neighbor

gene id symbol gene type direction distance location
AMCG00008450 olfm2,LOC104918560,LOC100706999 coding upstream 118720 1497221 ~ 1506574 (+)
AMCG00008448 NA coding upstream 138891 1485010 ~ 1486403 (+)
AMCG00008449 NA coding upstream 151311 1472688 ~ 1473983 (+)
AMCG00008447 NA coding upstream 180836 1444177 ~ 1444458 (+)
AMCG00008444 col5a3,LOC106593482 coding upstream 302547 1315607 ~ 1322747 (+)
AMCG00008455 NA coding downstream 82784 1711117 ~ 1716867 (+)
AMCG00008454 NA coding downstream 89839 1718172 ~ 1737515 (+)
AMCG00008459 NA coding downstream 166478 1794811 ~ 1795802 (+)
AMCG00008461 NA coding downstream 168011 1796344 ~ 1801758 (+)
AMCG00008458 NA coding downstream 245704 1874037 ~ 1880962 (+)
G49221 NA non-coding upstream 118359 1506713 ~ 1506935 (+)
G49178 NA non-coding upstream 462604 1162483 ~ 1162690 (+)
G49097 NA non-coding upstream 507514 1080021 ~ 1117780 (+)
G49110 LOC108429650,LOC105905712,LOC104952487 non-coding upstream 528660 1092721 ~ 1096634 (+)
G49107 NA non-coding upstream 538136 1086570 ~ 1087158 (+)
G49233 NA non-coding downstream 1607 1629940 ~ 1631543 (+)
G49236 NA non-coding downstream 14097 1642430 ~ 1741577 (+)
G49261 NA non-coding downstream 171528 1799861 ~ 1856256 (+)
G49264 NA non-coding downstream 175492 1803825 ~ 1806027 (+)
G49270 NA non-coding downstream 187251 1815584 ~ 1848738 (+)
G49208 NA other upstream 301025 1322811 ~ 1324269 (+)
AMCG00008423 NA other upstream 656711 965838 ~ 968583 (+)
G49013 NA other upstream 745781 876554 ~ 879513 (+)
G48846 NA other upstream 1036848 587280 ~ 588446 (+)
G48811 NA other upstream 1073388 473745 ~ 551906 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 302321 1930654 ~ 1936502 (+)
AMCG00008473 NA other downstream 434223 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 460147 2088480 ~ 2107792 (+)
AMCG00008476 NA other downstream 499382 2127715 ~ 2143394 (+)
G49340 cdc37 other downstream 581150 2209483 ~ 2211514 (+)

Expression


Co-expression Network