AMCG00008475


Basic Information

Item Value
gene id AMCG00008475
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2088480 ~ 2107792 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008475
ATGGACTGGGCTGCGCTGCAACAATGCGCTTTCATGGCTCTGTGTCTGCTCTACACGGctgcTGCTGCGTTCTGTCCCATTGAGATTAACCCTGAGAGAGTGGTGGTGAAATATGGAGATCCAGTATCGGCCAACTGCACTGTAACACGGACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCATAGACATGCAGACGGGTCCCCAGTCTCTCGTCTGGAGTGCCAGCAGTCTGACTGACTGGGCTGTAGAGCCCAAATGCTACGCAAACTTTGATACGGAGCCAAAGCAGTGTTTGAAAAAGCTCAACATCCTTCTCTACAGTAAGTATCCTTATATTTTGATATGGGGCTGTAGCAGAGAATTTGGAAGCACCAAGCTGAGACTGGGACCAGAAGGACTACAAGCAAACCCTGTGATGAAGTCTGAGCCCCTCAACATCACAGTGCTGTGTGAGTTCCACCGCCATGCATctgctgctgcagacTGTCCCATTGAGATTGACCCTCCCACAGTGGTGGTGAAATATGGAGATCCAGTAACAGTTCACTGCACTGCAACACAGAGAACCAGAGAAATGGGCTGGGAGGTACCAAATGGATCCAGAAGCCTGCTACGAGGTAGTCAGTCTCTCCTCTGGAGTTTCAGCAATCTGACTGACTGGACCGCAGAGCCAAGATGCTACGCAAAGTTTGATACGGAGCCCAAGCAATGTTATAAAAAGCTCAGCATCCTTCACTACAGTAACTGCACTGATGGTGGATTAAAATTCAGTTGTGCGGCAGAGCTAAAACTGGGACAAGAAGGACCACAACCAAACCCTGTTATGAAGTCTGAGTCCCTCCACATCACAGAGCTGTctgctgctgcagacTGTCCCATTGTGATTGACCCTCCCACAGTGGTGGTGAGATATGGAGATCCAGTAACAGTTCACTGCACTGCAACACGCACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCATAGACATGCAAATAGGTGTCCAGTCTGCCCTCTGGAGCGTCAGCAGTCTAACTGACTGGACAGCAGAGCCCAAGTGCTTCTCAAACTTTGATACGGAGCCCAAGCAGTGTGAGAAAAAGCCCAGCATCCTTCTCTACAAGTATCCAGATAGTGTCTCCATCAGGTCTGTCAGAAACACTGGTCCAATGGAGGAGGGGAGACCATACTGGCTGCTGTGTGAGGTCAAGAGCATCGCCCCAGTCCAGTATCTCTCTGTGAACTGGTATAGAGGGGGGACTTTAATCCACAATGACACCTTTGCTAACTTCACCACCAGAACACCTGTGGATGTACCTCGTACCCTCCTGATCACCCCAAGCTGCACCAATGATGGAGCACAGTACAGTTGTGAGGCagagctgaaactgggacaagGAGGGCCAAACCCTGTTATGAAATCTGAGCCCCTCCGTGCCACAGTGCTGTGTGAGTCCCACCACCAGGCAGGCActgctgctgcagtcTGTCCCATTGTGATTGACCCTCCCACAGTGGTGGTGAAATATGGAGATCCAGTATCGGCCAACTGCACTGCAACACGGACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCACAGGCATTAAGACTGGTCCCCAGTCTCTCCTCTGGGGCGTCAGCAATCTGACTGACTGGACTGTAGAGCCCACATGCTTCTCAAACTTTGATACGGATCCAAAGCAGTGCGGGAAAAAGCTCAACATCAGTCTCTACAAGTATCCAGACAGTGTCTCTATCAGCTCTGTGGGACACACTGGTCCAATGGAGGAGGGGAGACAGTACTGGCTGCTGTGTGAAGTCAAGAGCATTGCCCCAGTCCAGTATCTCTCTGTGAACTGGTATAGAGAGGGAGCTTTAATCTACAATGAAATCTTTCCTGAATTCACTGCCAGAACACCTGTGGATGTGTCTCATCCCCTCCTGATCACCCCCAGCTGCACCAATGGTGGAGTCCACTACATGTGTGAGGCAGAGCTGAAACTGGGACCAGGAGGACCACAACCAAACCATGTGATGAAGTCTGAGATCCTCCGTGCCACAATGCTGTGTGAGTCCCACCGCCATGCATATTGGGCAGATTGCACTGGAGCACACGGGTCTGAACACGGGCTGGAAAGCCAGGAAGTGTCCCTGTACTCTTGA
>TU61588
CTCTGAGTCACGTAGAGGGGGCTGTGTGAGAGGGCTTCCTGTGCGTATAtcctgttttatatttaatgcgCAAAAATGTCTGCTGCATAAGTTGCTACATAGAAACTCATTCTTAACAGGAATGTTTCAGGGTGACGGGGCCTTTAGGAGTAAGGTGGGGACGGGTGTATTAACCGTGTCAAAATATTTTCCTGCAGACCATGTACTCCCACCTCCTCAGTCATGATTTCAGTTCAAAACTAACCCCATTGTAAATGATGTAGAAAAGGATGAGTGAAGGGAGATGCTGATCTGATAGGATACAGCAAACAAGCTGCAATGGACAAATAGTTTTTAATTCATCGTTCTGCAGTTATTCGTTTTATTACTTTCGATTGGcttaggactttaaactggagtttaGCTTGTTTACCTTGTATTGATATCAgaggaaataataattgctaAATACAGTCCtgctatatacagttaggtccataaatatttggacagtgacacaattgtcatcatttttgaaaatggatttgaaaggaaacaatcaagatgtgctttaagtgcagactttcatctttaatgtgagggtagttgaggtagatgctgggtttcttccctggtgatgctctgccaggcctgcactgcagctgtctttagtccctgcttgtttttggggcattttgcctcaAAACTCACATTTAGACCCATGTCAACACTGCAGGTTTAGAGAGACAGTGAAATCTTCTCGGGTCAGAACATGTTTGGGCAACCCTTGCAATTTAGTTCCTCAGTGATGAtgtcgttgttgtttttcagctgcTGCTGCGTTCTGTCCCATTGAGATTAACCCTGAGAGAGTGGTGGTGAAATATGGAGATCCAGTATCGGCCAACTGCACTGTAACACGGACAACCAGAGGAATGGGCTGGGAGGCATCGGTTGGATCCATAGACATGCAGACGGGTCCCCAGTCTCTCGTCTGGAGTGCCAGCAGTCTGACTGACTGGGCTGTAGAGCCCAAATGCTACGCAAACTTTGATACGGAGCCAAAGCAGTGTTTGAAAAAGCTCAACATCCTTCTCTACAAGTATCCAGACAGAGTCTCTATCAGCTCTGTGGGACACACTGGTCCAATGGAGGAGGGGAGACAGTACCTGCTGCAGTGTGATGTCCAGAGCATCGCCCCAGTCCAGTATCTCTCTGTGAACTGGTATAGAGGGGGGGCATTAATCCACACAGAAACCTTCACTAGAAACACCACTAGAACACCTGTGAATGTGTCTCCTACCCTCCCCATAACCCCCAATCGCACTGATGATAGAGTTCTGTACATGTGTGAGGCAGAGCTGAGACTGGGACCAGAAGGACTACAAGCAAACCCTGTGATGAAGTCTGAGCCCCTCAACATCACAGTGCTGTacTGTCCCATTGTGATTGACCCTCCCACAGTGGTGGTGAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008475 True 2184 mRNA 0.52 10 2088480 2107792
TU61588 False 1455 TUCP 0.46 3 2091961 2105573

Neighbor

gene id symbol gene type direction distance location
AMCG00008472 NA coding upstream 41543 2030788 ~ 2046937 (+)
AMCG00008468 eif3g coding upstream 194253 1891096 ~ 1894227 (+)
AMCG00008460 NA coding upstream 198713 1884367 ~ 1889767 (+)
AMCG00008458 NA coding upstream 207518 1874037 ~ 1880962 (+)
AMCG00008461 NA coding upstream 286722 1796344 ~ 1801758 (+)
AMCG00008478 NA coding downstream 148665 2256457 ~ 2257456 (+)
AMCG00008479 pde4a,LOC107703358,LOC107725012,LOC107587971,LOC107674699,LOC107596808,LOC108243727 coding downstream 168999 2276791 ~ 2277090 (+)
AMCG00008484 NA coding downstream 287272 2395064 ~ 2402598 (+)
AMCG00008485 NA coding downstream 312548 2420340 ~ 2422009 (+)
AMCG00008483 NA coding downstream 316603 2424395 ~ 2430781 (+)
G49294 NA non-coding upstream 178061 1908823 ~ 1910419 (+)
G49261 NA non-coding upstream 232224 1799861 ~ 1856256 (+)
G49321 NA non-coding downstream 55527 2163319 ~ 2208477 (+)
G49341 NA non-coding downstream 104637 2212429 ~ 2213493 (+)
G49431 NA non-coding downstream 337393 2445185 ~ 2464667 (+)
G49541 NA non-coding downstream 704382 2812174 ~ 2812893 (+)
G49582 NA non-coding downstream 778039 2885831 ~ 2886138 (+)
AMCG00008473 NA other upstream 12831 2062556 ~ 2075649 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other upstream 151978 1930654 ~ 1936502 (+)
AMCG00008451 ubl5 other upstream 460147 1625294 ~ 1628333 (+)
G49208 NA other upstream 764211 1322811 ~ 1324269 (+)
AMCG00008423 NA other upstream 1119897 965838 ~ 968583 (+)
AMCG00008476 NA other downstream 19923 2127715 ~ 2143394 (+)
G49340 cdc37 other downstream 101691 2209483 ~ 2211514 (+)
G49523 NA other downstream 658087 2765879 ~ 2770044 (+)
G49583 smarca4,LOC102779508 other downstream 778974 2886766 ~ 2888896 (+)
AMCG00008526 NA other downstream 1322105 3429897 ~ 3885604 (+)

Expression


Co-expression Network