G49583 (smarca4,LOC102779508)


Basic Information

Item Value
gene id G49583
gene name smarca4,LOC102779508
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2886766 ~ 2888896 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62012
CGTTGGTAAGATTTCTTTATTGTAGTTTTGAGATCCAGTGACACTGACACGTACAGAAGGGCCCCACCGCCCCAGGGTGGGGATGACCCCTTGAcctgctttttaattaaaaacacagcacagtactCCGGAGTGCGTttctacagacacacacacacacacccccacccacccacacacgcacatgcattCACGTACTGAGTTACACAGACTCCTGGCGCTGTACCTGGAATACAGTCCTGCGTGGAAATACAGACCGACCGacgaacacaaaacaaaaaggtaaaaaaagaCGATGGGAAAGAAAACGAACGTAACTAAACTGTTCCCACGGTTCGCCGTTGAGCTGGAAGTTCGTTACCCACTGCAGGAAAGAAACGAAACAGAGGGCAAGACATTAAAACAGTCCTACATTTCATACCGGCCTTGTATAAATATGGAAgtgggtttattattatttaatttttttattatttttatgactttaatacatttttcactaaAAATCTGCTCATCTAGGAATTCTACCCCTCGCCGTCGCTCTCAATAAAATATAGGTGTGCGTTCTCGGGACAGATGGCAGTGGAACGGTCCTCCGGGCCTCAGTCCTCCTCGCTGCCGGTGGCCGAGCGGTCctcctcctgctcctcctcgcTGTCGTCGTCGCTGACCACCGGCTTGGCTCTGGAACCGCGGCCCAACCGGCGCCGGCCCTTGCCGCGCTCCTGGCTCTTCTCCTTGCGGCCCAGCTTGATCTTCACCTTCACGGAGCGTGACTCCGACTCGGAGCCCTCGtccacctcctcttcctcctcctcgctcTCGTCACCCTCGCTGTCCTCCTCCTTCTCGATCTTCTGCCGCACGCTTGTGAACACCGACTGGAGCACGATGGAGTCCTCGTATATCTGTTCGTCCAGCGATCCCTCCAGGTTGAAGGTCTGGGCGTTCTGGCACAGTAGCATCACGTCCTTCTCTAGGTCGTTCAGGCTGCGGTACTTGTGGTTGCGGATCCTCTC

Function

symbol description
smarca4 Enables several functions, including DNA polymerase binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and lysine-acetylated histone binding activity. Contributes to RNA polymerase I core promoter sequence-specific DNA binding activity. Involved in several processes, including chromatin organization; regulation of signal transduction; and regulation of transcription, DNA-templated. Located in chromatin and nucleolus. Part of SWI/SNF complex and npBAF complex. Implicated in Coffin-Siris syndrome 4; hepatocellular carcinoma; lung non-small cell carcinoma; and rhabdoid cancer. Biomarker of prostate cancer.

NR:

description
PREDICTED: transcription activator BRG1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62012 True 1019 TUCP 0.53 4 2886766 2888896

Neighbor

gene id symbol gene type direction distance location
AMCG00008497 NA coding upstream 63670 2815396 ~ 2823096 (+)
AMCG00008498 keap1 coding upstream 75467 2798540 ~ 2811299 (+)
AMCG00008499 NA coding upstream 92886 2787868 ~ 2793880 (+)
AMCG00008493 NA coding upstream 166105 2715820 ~ 2720661 (+)
AMCG00008489 elavl3,LOC102780136 coding upstream 256567 2616463 ~ 2630199 (+)
AMCG00008505 NA coding downstream 15663 2904559 ~ 2906941 (+)
AMCG00008509 NA coding downstream 106045 2994941 ~ 3003560 (+)
AMCG00008510 prdx2 coding downstream 127560 3016456 ~ 3019921 (+)
AMCG00008514 NA coding downstream 131699 3020595 ~ 3021066 (+)
AMCG00008516 LOC106601330 coding downstream 198284 3087180 ~ 3102783 (+)
G49582 NA non-coding upstream 628 2885831 ~ 2886138 (+)
G49541 NA non-coding upstream 73873 2812174 ~ 2812893 (+)
G49431 NA non-coding upstream 422099 2445185 ~ 2464667 (+)
G49341 NA non-coding upstream 673273 2212429 ~ 2213493 (+)
G49321 NA non-coding upstream 678289 2163319 ~ 2208477 (+)
G49598 NA non-coding downstream 20766 2909662 ~ 2910628 (+)
G49599 NA non-coding downstream 21798 2910694 ~ 2910939 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding downstream 139082 3027978 ~ 3042595 (+)
G49738 NA non-coding downstream 467803 3356699 ~ 3359529 (+)
G49754 NA non-coding downstream 525285 3414181 ~ 3443897 (+)
G49523 NA other upstream 116722 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 675252 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 743372 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 778974 2088480 ~ 2107792 (+)
AMCG00008473 NA other upstream 811117 2062556 ~ 2075649 (+)
AMCG00008526 NA other downstream 541001 3429897 ~ 3885604 (+)
G49980 NA other downstream 1267192 4156088 ~ 4160062 (+)
G49982 NA other downstream 1273162 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 1673095 4561991 ~ 4572874 (+)
G50215 NA other downstream 2707127 5596023 ~ 5596799 (+)

Expression


Co-expression Network