AMCG00008526


Basic Information

Item Value
gene id AMCG00008526
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3429897 ~ 3885604 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008526
CCTAAGAGCTACGTCCCGGACGCCCCCGTACCCCCGTCCTCGGAGGAGGATGTGCATGAGCTCCTCTCCCAGGCAGTGCAGAAAGTGCTGCTGATGATAGAGGAGCTGAAGGGCAGAGACCTCGGTGATCACCAGAAGAAGTTCCTCGCCAGAATCGAAAATAATATCCCATACTACAACATAGGGATCAAACTCCCCGAGATGCAGATATATGACACTGAGTAAGAAGAGGACAGTGGCGAGGATGACCCGGAAGTACTGAAGCGCGACATGCTGGAGCGCCAGTCCCAGCGCATCGTCGCCTACCACACCAAGGGGAAGGAGAAGAGGAGCAAGAAGAAGAAGGCAATTAGTAGCCCTACAGTATTTATCAGTTCTTGATTCCTAATTGGGTTCTTCCACTCCCACTCTCCTCCAGTTTATAATCTGGCACCACAGTTGAT
>TU62240
acagCCTAAGAGCTACGTCCCGGACGCCCCCGTACCCCCGTCCTCGGAGGAGGATGTGCATGAGCTCCTCTCCCAGGCAGTGCAGAAAGTGCTGCTGATGATAGAGGAGCTGAAGGGCAGAGACCTCGGTGATCACCAGAAGAAGAAGAGGACAGTGGCGAGGATGACCCGGAAGTACTGAAGCGCGACATGCTGGAGCGCCAGTCCCAGCGCATCGTCGCCTACCACACCAAGGGGAAGGAGAAGAGGAGCAAGAAGAAGAAGGCAATTAGTAGCCCTACAGTATTTATCAGTTCTTGATTCCTAATTGGGTTCTTCCACTCCCACTCTCCTCCAGTTTATAATCTGGCACCACAGTTGATTTATGTTGACTTTCACAGCCTTCTAGGGTAAAATGGGCTGGATTTAGTTGAGTTTCTACCCCCGCATCATGTTCGCTATTGCGTACTTGATAACAAATGTACGAATAATGAACAattttttggtaacactttgcaataaaatgttagttaggattaacaaacatctaaatatgtcATCCTTGAAATGTGTcctgtttattcatgttaaccAAGTCATTTGCTCATGTTAGTTACTGCCTCTGAATATTCAGACgaagaaagacaaaccaattaatgaattcatgcagtaagaacataagaacataagaaagtttacaaacgagaggaggccattcgacccatcgtgctcgtttggtgtccattaataactgagtgatccaaggatcccatccagtctatttttaaatgttcccaaactttcagcttctaccacatcgctggggagtttgttcagattgtgatgcctctctgtgtaaagaagtgtctcctgttttatgtttttaatgccttgaagcccaatttccatttgtgtccctgggtgcgtgtgtctggaatctggaaaagctcctctgcttTGATGTGGTTGTTGcccatgattttgaagacttggatcaagtccccatgtagtctcctctgttccagggtgaaaaggttcaggtcctcagtctctcagtaggacattcccttcagacctggaaaaagtctggttgctctcctctgaactgcctctagacatttgaatttcatctgcattgaatttaattttgtgcTGCTATGTCAGCCCACACTAGGTTAACCAGTTTACAAACCTATCCTCACATCTCAGAACAAATTCCTGACTATATAGAACAATGGAACACTAGAAGCAGCACAGGTTCACTCACACCTAGAAGTGTCACACcagtttaaattactttattcaTGTATCATAATGAAAGACGAATAAccattatatatttactttttattacaatgtataatTGAACATCACTGTAATTTTaaccatttttaatatttttaacatttgttctTCAGTACAAAATTAGAACAAATAAGAAAacgtttaataaaaaataaatcattcaaggaattttacaaaaaactgaacaatcCACGGCTGAAACCCTCCCTTGTCAAGGCTCTGTCTTATTGTCATTTGCACGTCTCTCTCTTGCAAGTGCAGAAAATTATAGATGAAATGAGTGGTAAACTCAAGTGGATGAGGAGAGTAGAAAAATAGccggcaaaataaaatattgattatgtAAAGAAGCTGTGCATTGTGAAAAGAATTTGATTTCTACAATATCTGTACTGAAGACGGGGAATGTTTTGGACTGTTTCTGTAACTGGAATTGCCACCAATGATCTGTGGATAATCTGAGGGTTCTGCTGTATAAAGTGTTGGGGAAGATAGTGTCCGACACTTGACTTTTCTGTACAGATTTAACTGTCGACGATGCTCgactttcaaacctggaaaaggGCGCTATAAAAAAGACGGGTGCTATGATCACGGATGCAAAGAACAATGTGAGACCTTTTCAGCATTATCTATACAATGGTTTTATTGTTGATGTTTAATgaactgttgtttatttttaaaatggctcatatcattgttttattcatgtatgtaacC

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008526 False 443 mRNA 0.52 3 3429901 3431004
TU62240 True 2004 lncRNA 0.40 4 3429897 3885604

Neighbor

gene id symbol gene type direction distance location
AMCG00008525 NA coding upstream 3637 3417511 ~ 3426260 (+)
AMCG00008523 NA coding upstream 74502 3353105 ~ 3355395 (+)
AMCG00008517 NA coding upstream 292565 3131880 ~ 3137332 (+)
AMCG00008515 NA coding upstream 305761 3119109 ~ 3124136 (+)
AMCG00008516 LOC106601330 coding upstream 327114 3087180 ~ 3102783 (+)
AMCG00008556 gcdh,LOC102794743,LOC100704678 coding downstream 48398 3934002 ~ 3939913 (+)
AMCG00008555 NA coding downstream 71937 3957541 ~ 3961050 (+)
AMCG00008560 NA coding downstream 123594 4009198 ~ 4010145 (+)
AMCG00008559 NA coding downstream 136921 4022525 ~ 4023493 (+)
AMCG00008569 NA coding downstream 212192 4097796 ~ 4098156 (+)
G49738 NA non-coding upstream 70368 3356699 ~ 3359529 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding upstream 387302 3027978 ~ 3042595 (+)
G49599 NA non-coding upstream 518958 2910694 ~ 2910939 (+)
G49598 NA non-coding upstream 519269 2909662 ~ 2910628 (+)
G49582 NA non-coding upstream 543759 2885831 ~ 2886138 (+)
G49914 NA non-coding downstream 77524 3963128 ~ 3964014 (+)
G49938 NA non-coding downstream 139497 4025101 ~ 4026246 (+)
G49944 NA non-coding downstream 149145 4034749 ~ 4035052 (+)
G50011 NA non-coding downstream 422222 4307826 ~ 4308836 (+)
G50055 NA non-coding downstream 576758 4462362 ~ 4468763 (+)
G49583 smarca4,LOC102779508 other upstream 541001 2886766 ~ 2888896 (+)
G49523 NA other upstream 659853 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 1218383 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 1286503 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 1322105 2088480 ~ 2107792 (+)
G49980 NA other downstream 270484 4156088 ~ 4160062 (+)
G49982 NA other downstream 276454 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 676387 4561991 ~ 4572874 (+)
G50215 NA other downstream 1710419 5596023 ~ 5596799 (+)
G50243 NA other downstream 1852937 5738541 ~ 5742750 (+)

Expression


Co-expression Network