Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00008556 |
| gene name | gcdh,LOC102794743,LOC100704678 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 3934002 ~ 3939913 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| gcdh | Enables glutaryl-CoA dehydrogenase activity. Involved in fatty acid beta-oxidation using acyl-CoA dehydrogenase. Located in mitochondrion. Implicated in glutaric acidemia I. |
| description |
|---|
| PREDICTED: glutaryl-CoA dehydrogenase, mitochondrial |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups | molecular_function |
| GO:0050660 | flavin adenine dinucleotide binding | molecular_function |
| GO:0003995 | acyl-CoA dehydrogenase activity | molecular_function |
| id | description |
|---|---|
| K00252 | GCDH, gcdH; glutaryl-CoA dehydrogenase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00008556 | True | 1287 | mRNA | 0.62 | 10 | 3934002 | 3939913 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00008552 | NA | coding | upstream | 72612 | 3856572 ~ 3861390 (+) |
| AMCG00008551 | NA | coding | upstream | 89382 | 3837133 ~ 3844620 (+) |
| AMCG00008550 | znf653,LOC106601191,LOC106601361 | coding | upstream | 99423 | 3823994 ~ 3834579 (+) |
| AMCG00008549 | NA | coding | upstream | 114826 | 3811585 ~ 3819176 (+) |
| AMCG00008548 | LOC106601364,LOC106601190 | coding | upstream | 124930 | 3789595 ~ 3809072 (+) |
| AMCG00008555 | NA | coding | downstream | 17628 | 3957541 ~ 3961050 (+) |
| AMCG00008560 | NA | coding | downstream | 69285 | 4009198 ~ 4010145 (+) |
| AMCG00008559 | NA | coding | downstream | 82612 | 4022525 ~ 4023493 (+) |
| AMCG00008569 | NA | coding | downstream | 157883 | 4097796 ~ 4098156 (+) |
| AMCG00008579 | NA | coding | downstream | 571077 | 4510990 ~ 4512060 (+) |
| G49753 | NA | non-coding | upstream | 488875 | 3444002 ~ 3445127 (+) |
| G49754 | NA | non-coding | upstream | 490105 | 3414181 ~ 3443897 (+) |
| G49738 | NA | non-coding | upstream | 574473 | 3356699 ~ 3359529 (+) |
| G49636 | LOC106607037,LOC105028343,LOC103364966,LOC106607038 | non-coding | upstream | 891407 | 3027978 ~ 3042595 (+) |
| G49599 | NA | non-coding | upstream | 1023063 | 2910694 ~ 2910939 (+) |
| G49914 | NA | non-coding | downstream | 23215 | 3963128 ~ 3964014 (+) |
| G49938 | NA | non-coding | downstream | 85188 | 4025101 ~ 4026246 (+) |
| G49944 | NA | non-coding | downstream | 94836 | 4034749 ~ 4035052 (+) |
| G50011 | NA | non-coding | downstream | 367913 | 4307826 ~ 4308836 (+) |
| G50055 | NA | non-coding | downstream | 522449 | 4462362 ~ 4468763 (+) |
| AMCG00008526 | NA | other | upstream | 48398 | 3429897 ~ 3885604 (+) |
| G49583 | smarca4,LOC102779508 | other | upstream | 1045106 | 2886766 ~ 2888896 (+) |
| G49523 | NA | other | upstream | 1163958 | 2765879 ~ 2770044 (+) |
| G49340 | cdc37 | other | upstream | 1722488 | 2209483 ~ 2211514 (+) |
| AMCG00008476 | NA | other | upstream | 1790608 | 2127715 ~ 2143394 (+) |
| G49980 | NA | other | downstream | 216175 | 4156088 ~ 4160062 (+) |
| G49982 | NA | other | downstream | 222145 | 4162058 ~ 4165483 (+) |
| AMCG00008580 | pnpla6,LOC106564686 | other | downstream | 622078 | 4561991 ~ 4572874 (+) |
| G50215 | NA | other | downstream | 1656110 | 5596023 ~ 5596799 (+) |
| G50243 | NA | other | downstream | 1798628 | 5738541 ~ 5742750 (+) |
