G49914


Basic Information

Item Value
gene id G49914
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3963128 ~ 3964014 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62428
tgcattcaatagGTACTctttttattagcagacacctttggccgctgtgtgtgtgtgtgtgtgtgtgtgtgtccgtctctctctctctctctctctctctgcatgatTTTGAAACACATATTCTGCAGATACAAAATTGGGTCCAGAGAGCAAGACAGTCATGTCCGGGGGCTTTCTATACAGTCCTGGTAGAGGAGGAAAATATAAGAATGACAGATGATGGCGAGTGTACAGGCCCACATAGGAAGCAATGAGTTGGAGTCCCAGTTTTATCGTCTTACGAAAAGAGCCAATGGAGACAGTTTATGAGCAGATAAACAGAGTCATAGATCGTTCCCTTTTGGATTGGTTAATAGTATTTGATAACCAGAAAAGTCGTTTGGAAACTTCACAGCGGTTAGATTTACAGGCGTGGGGGTTACAAATCTGAATTTAACAATGGAAAACAGTGCTGTGGAATAATGAACATGATCtgtactaaaacaaacaaacccttcTTACTGTggttcaaataaatacactttatgGCTCCCATTTGAatcttacacattttttttttttttttttCTTTCTTTCCCTGCTCTGGACGGAGAACCTACAAGTCGCAGATTAGCTATCTAGCGTGTGTATCAGAGAGATCCATTAGTAAAGCCTGCTGGCAGGGGAGGGCTGGGAGTTGTATAGAAGGGGTCCTGAGGAGACAGCCCTGGGCGCAGTGCGGCCGAGGGTCATCCATGTCGGTCCCCGAAGGAATCAGGAGTCCAGCCGACACACTGGGCTGTCGTAGACCATCTGTAGGTTGACCTTGTGTCCCACTAGCTCTCGGATGTTGTTGATGCCGTACTTGATCATAGTGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62428 True 859 lncRNA 0.45 2 3963128 3964014

Neighbor

gene id symbol gene type direction distance location
AMCG00008555 NA coding upstream 2078 3957541 ~ 3961050 (+)
AMCG00008556 gcdh,LOC102794743,LOC100704678 coding upstream 23215 3934002 ~ 3939913 (+)
AMCG00008552 NA coding upstream 101738 3856572 ~ 3861390 (+)
AMCG00008551 NA coding upstream 118508 3837133 ~ 3844620 (+)
AMCG00008550 znf653,LOC106601191,LOC106601361 coding upstream 128549 3823994 ~ 3834579 (+)
AMCG00008560 NA coding downstream 45184 4009198 ~ 4010145 (+)
AMCG00008559 NA coding downstream 58511 4022525 ~ 4023493 (+)
AMCG00008569 NA coding downstream 133782 4097796 ~ 4098156 (+)
AMCG00008579 NA coding downstream 546976 4510990 ~ 4512060 (+)
AMCG00008588 NA coding downstream 836440 4800454 ~ 4812907 (+)
G49753 NA non-coding upstream 518001 3444002 ~ 3445127 (+)
G49754 NA non-coding upstream 519231 3414181 ~ 3443897 (+)
G49738 NA non-coding upstream 603599 3356699 ~ 3359529 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding upstream 920533 3027978 ~ 3042595 (+)
G49599 NA non-coding upstream 1052189 2910694 ~ 2910939 (+)
G49938 NA non-coding downstream 61087 4025101 ~ 4026246 (+)
G49944 NA non-coding downstream 70735 4034749 ~ 4035052 (+)
G50011 NA non-coding downstream 343812 4307826 ~ 4308836 (+)
G50055 NA non-coding downstream 498348 4462362 ~ 4468763 (+)
G50061 NA non-coding downstream 523985 4487999 ~ 4488238 (+)
AMCG00008526 NA other upstream 77524 3429897 ~ 3885604 (+)
G49583 smarca4,LOC102779508 other upstream 1074232 2886766 ~ 2888896 (+)
G49523 NA other upstream 1193084 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 1751614 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 1819734 2127715 ~ 2143394 (+)
G49980 NA other downstream 192074 4156088 ~ 4160062 (+)
G49982 NA other downstream 198044 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 597977 4561991 ~ 4572874 (+)
G50215 NA other downstream 1632009 5596023 ~ 5596799 (+)
G50243 NA other downstream 1774527 5738541 ~ 5742750 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G210427 NA non-coding NC_047607.1 CM018553.1 13077999 ~ 13078945 (-)
tiger barb (Puntius tetrazona) G168400 aass,LOC107752301,LOC107678990,LOC107753626 non-coding NC_056723.1 CM032092.1 10638063 ~ 10640728 (+)