G49431


Basic Information

Item Value
gene id G49431
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2445185 ~ 2464667 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61817
CGAGAATCCAGATCAGGAGCCTTCACCTAACAGTGCTTGTGTCGGAGGGGTTTCAGTCCTGCTTCGATTGGGGCCGCATCGGTACACCTGCCTTCACACCTGCATCCTCCCTccaatctctctctgtgtctctccttccctttctccctctcgctgtctctctctcactctgtccgtctttctctctcttgctcttgctctgtccttctttctctttcagaaaTCACACTGAATCAC

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
TU61817 True 237 lncRNA 0.52 2 2445185 2464667

Neighbor

gene id symbol gene type direction distance location
AMCG00008483 NA coding upstream 14404 2424395 ~ 2430781 (+)
AMCG00008485 NA coding upstream 23176 2420340 ~ 2422009 (+)
AMCG00008484 NA coding upstream 42587 2395064 ~ 2402598 (+)
AMCG00008479 pde4a,LOC107703358,LOC107725012,LOC107587971,LOC107674699,LOC107596808,LOC108243727 coding upstream 168095 2276791 ~ 2277090 (+)
AMCG00008478 NA coding upstream 187729 2256457 ~ 2257456 (+)
AMCG00008487 NA coding downstream 50562 2515229 ~ 2516509 (+)
AMCG00008489 elavl3,LOC102780136 coding downstream 151796 2616463 ~ 2630199 (+)
AMCG00008493 NA coding downstream 251153 2715820 ~ 2720661 (+)
AMCG00008499 NA coding downstream 323201 2787868 ~ 2793880 (+)
AMCG00008498 keap1 coding downstream 333873 2798540 ~ 2811299 (+)
G49341 NA non-coding upstream 231692 2212429 ~ 2213493 (+)
G49321 NA non-coding upstream 236708 2163319 ~ 2208477 (+)
G49294 NA non-coding upstream 534766 1908823 ~ 1910419 (+)
G49270 NA non-coding upstream 596447 1815584 ~ 1848738 (+)
G49271 NA non-coding upstream 606181 1838186 ~ 1839004 (+)
G49541 NA non-coding downstream 347507 2812174 ~ 2812893 (+)
G49582 NA non-coding downstream 421164 2885831 ~ 2886138 (+)
G49598 NA non-coding downstream 444995 2909662 ~ 2910628 (+)
G49599 NA non-coding downstream 446027 2910694 ~ 2910939 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding downstream 563311 3027978 ~ 3042595 (+)
G49340 cdc37 other upstream 233671 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 301791 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 337393 2088480 ~ 2107792 (+)
AMCG00008473 NA other upstream 369536 2062556 ~ 2075649 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other upstream 508683 1930654 ~ 1936502 (+)
G49523 NA other downstream 301212 2765879 ~ 2770044 (+)
G49583 smarca4,LOC102779508 other downstream 422099 2886766 ~ 2888896 (+)
AMCG00008526 NA other downstream 965230 3429897 ~ 3885604 (+)
G49980 NA other downstream 1691421 4156088 ~ 4160062 (+)
G49982 NA other downstream 1697391 4162058 ~ 4165483 (+)

Expression


Co-expression Network