G49271


Basic Information

Item Value
gene id G49271
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1838186 ~ 1839004 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61582
GCAGCATacaaggaggaggaaaagaTCGAAGTGTAGGCTTGTTGATCTTACACATTATTGTAAATTCGAGGGCCTCAGACTTCATAGCAGGGTTTGGCTGTGGTCCTTCTGGTCCCAGTCTCAGCTCTGCCTCACAGAAGTACTGCACTGTCCGGGTGGGTGTGACCATGAAGATAACAGGAACATCCACAGGTGTTCTAGTGGTGTCATCAGAGAAGTTTACAGTGTTGATTAAAGCCTCCCCTCTATACCAGTTCACAGCGAGATACTGGACTGGGGCAATGCTCCTGACCTCACACTGCAACAGATATTCTCCCCTCTTCTTCATCTCAGCAGTGCGGGCTTGAGAGCTGATAGAGACACTGGCTGGATATGTAGAGACTGATGTTGAGCTTTTTCTCACATTGCTTGGGCTCTGTCTCAAAGTTTACGAAGCATCTGGGCTCCGTAGTCCAGTCAGTCAGACTGCTGACATTCCAGAGGACAGACTGGGGACCAATCTTAATGCCTGTGGATCCAACTGTTGCCTCCCAGCCCATTCCTCTGGTTGTCCGTGTTGCAGTGCAGTTAACTGATACTGAATCTCCATGTTTCACCACCACTCTGGCAGGGTTAATCTTTAAGGGACAGTCTGCAGCAGCTactgcaaaatgcaaatgattttcattttctcattcaATCTCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61582 True 685 lncRNA 0.48 2 1838186 1839004

Neighbor

gene id symbol gene type direction distance location
AMCG00008461 NA coding upstream 36428 1796344 ~ 1801758 (+)
AMCG00008459 NA coding upstream 42384 1794811 ~ 1795802 (+)
AMCG00008454 NA coding upstream 100671 1718172 ~ 1737515 (+)
AMCG00008455 NA coding upstream 121319 1711117 ~ 1716867 (+)
AMCG00008450 olfm2,LOC104918560,LOC100706999 coding upstream 331612 1497221 ~ 1506574 (+)
AMCG00008458 NA coding downstream 35033 1874037 ~ 1880962 (+)
AMCG00008460 NA coding downstream 45363 1884367 ~ 1889767 (+)
AMCG00008468 eif3g coding downstream 52092 1891096 ~ 1894227 (+)
AMCG00008472 NA coding downstream 191784 2030788 ~ 2046937 (+)
AMCG00008478 NA coding downstream 417453 2256457 ~ 2257456 (+)
G49264 NA non-coding upstream 32159 1803825 ~ 1806027 (+)
G49236 NA non-coding upstream 96609 1642430 ~ 1741577 (+)
G49233 NA non-coding upstream 206643 1629940 ~ 1631543 (+)
G49221 NA non-coding upstream 331251 1506713 ~ 1506935 (+)
G49178 NA non-coding upstream 675496 1162483 ~ 1162690 (+)
G49294 NA non-coding downstream 69819 1908823 ~ 1910419 (+)
G49321 NA non-coding downstream 324315 2163319 ~ 2208477 (+)
G49341 NA non-coding downstream 373425 2212429 ~ 2213493 (+)
G49431 NA non-coding downstream 606181 2445185 ~ 2464667 (+)
G49541 NA non-coding downstream 973170 2812174 ~ 2812893 (+)
AMCG00008451 ubl5 other upstream 209853 1625294 ~ 1628333 (+)
G49208 NA other upstream 513917 1322811 ~ 1324269 (+)
AMCG00008423 NA other upstream 869603 965838 ~ 968583 (+)
G49013 NA other upstream 958673 876554 ~ 879513 (+)
G48846 NA other upstream 1249740 587280 ~ 588446 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 91650 1930654 ~ 1936502 (+)
AMCG00008473 NA other downstream 223552 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 249476 2088480 ~ 2107792 (+)
AMCG00008476 NA other downstream 288711 2127715 ~ 2143394 (+)
G49340 cdc37 other downstream 370479 2209483 ~ 2211514 (+)

Expression


Co-expression Network