G49541


Basic Information

Item Value
gene id G49541
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2812174 ~ 2812893 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61966
gccagatatctgcaaaccagaGGCACAGAGATGACGGCGGACCTGGTTCTCAGTGGCTCCGTTTACATGGAGTCTAATAATccattaatctctctctctctgtgcgtgtgtgcatgtgggttGTCACGTACATGGCCGAAGGGATGACCTCGGTCGTGTCCTCGTCCACCTCGCACTGCAGCGCCTGGATCTCCCTCTCGGTGTCGCGCAGGCTGTCCAGCTCTGTCTGCAGGAACTGCAGGTCGGCCTGCAGCGTGTCCCTCCTGGCCGCGCTCTGGCCCAGGTGCCTCTCCATGctctccagctcctgcagcacGCGGCTCTTCTGCCTCTCCCGGTCCAGCAGGTCCTGGGCCACCTTCTCCTCGGTGTGCAGCAGATctg

Function

GO:

id name namespace
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU61966 True 384 lncRNA 0.61 2 2812174 2812893

Neighbor

gene id symbol gene type direction distance location
AMCG00008498 keap1 coding upstream 875 2798540 ~ 2811299 (+)
AMCG00008499 NA coding upstream 18294 2787868 ~ 2793880 (+)
AMCG00008493 NA coding upstream 91513 2715820 ~ 2720661 (+)
AMCG00008489 elavl3,LOC102780136 coding upstream 181975 2616463 ~ 2630199 (+)
AMCG00008487 NA coding upstream 295665 2515229 ~ 2516509 (+)
AMCG00008497 NA coding downstream 2503 2815396 ~ 2823096 (+)
AMCG00008505 NA coding downstream 91666 2904559 ~ 2906941 (+)
AMCG00008509 NA coding downstream 182048 2994941 ~ 3003560 (+)
AMCG00008510 prdx2 coding downstream 203563 3016456 ~ 3019921 (+)
AMCG00008514 NA coding downstream 207702 3020595 ~ 3021066 (+)
G49431 NA non-coding upstream 347507 2445185 ~ 2464667 (+)
G49341 NA non-coding upstream 598681 2212429 ~ 2213493 (+)
G49321 NA non-coding upstream 603697 2163319 ~ 2208477 (+)
G49294 NA non-coding upstream 901755 1908823 ~ 1910419 (+)
G49270 NA non-coding upstream 963436 1815584 ~ 1848738 (+)
G49582 NA non-coding downstream 72938 2885831 ~ 2886138 (+)
G49598 NA non-coding downstream 96769 2909662 ~ 2910628 (+)
G49599 NA non-coding downstream 97801 2910694 ~ 2910939 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding downstream 215085 3027978 ~ 3042595 (+)
G49738 NA non-coding downstream 543806 3356699 ~ 3359529 (+)
G49523 NA other upstream 42130 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 600660 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 668780 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 704382 2088480 ~ 2107792 (+)
AMCG00008473 NA other upstream 736525 2062556 ~ 2075649 (+)
G49583 smarca4,LOC102779508 other downstream 73873 2886766 ~ 2888896 (+)
AMCG00008526 NA other downstream 617004 3429897 ~ 3885604 (+)
G49980 NA other downstream 1343195 4156088 ~ 4160062 (+)
G49982 NA other downstream 1349165 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 1749098 4561991 ~ 4572874 (+)

Expression


Co-expression Network