G49298 (s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933)


Basic Information

Item Value
gene id G49298
gene name s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1930654 ~ 1936502 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61614
cacacacacaaacacacacacacacatatatacatagacaAGTTATTATCTTACTTACAATATTCCACAGGGTTAGAtcacaaagaaatgaaaacacaaatgtactAAAACGAAATACAAAATCCATCAATGTCAGAACGTAGGCTACGAAGACAGGGTGAGGATTTTCCCACCAAAGTGCTATCTCTGTTTCTAATTGGTTGTCTTTGCGGTTTGACTGGCAGGGGAAGAAAGCCACCATTTAAACCCCGGTAGTGGCCATTGGGGGAGACTGGCAATGTGGGGCGGAGCTTGCAGGGAAGGCCGTTGGCTTGGATTGGAGGTAGGCGACGTCCAAGATAGACAGGATGAACAAGGGGTCAGAATggatttcaatgttttatttttttactgggAGACAGTCCACTGTGTTCTTCGGCCTCGCAGGACTGATTCACGGTCAGCTACACCCAGCCTACCCCCGAACACTCTCTCCTCCTTGGCTGAGCAATGCTCCCATCTGGAAACGAAGAGCTTGACGTCGCAGAGGGCCCCGTAACCTCATCCTGTCAACAACAGGAATTCCCCGTAAGAGACAGGACTTCCTCTGGCTGCACTGGGTCTTATTTTACACCAGGGGGGCGGGAGATCTTTTAAGTCATTGCCTTCCAAACAAAGCAGcgggagggagtgggggggtaaTGAACTTGCCGGTTGACCTTTCTTAGTGTTAGAAACAAAGAGGTGCGCTGAGCCATATGGGGGCCAGTCAGAGACCGGATCTGGGATGGCTCGACCTCACAAGTCGGCAGGAGACGGAAACGGGCTCCTTTAAAAAAAGGTCTATTCTGGGAAAAGGCGTTTCTTGCAGGTCCTGTCGGAGCAAGGGTGTTGCTCTTGGGTCCCCGAAGAGGAGAACGATATCTGGCTGCATCTACACCGTTGCCCAAATTGTTAATCTGtttccaaatattttaaaaagctaaatgTCGCTTTGACACAGTAGGATCCAGATCTAGGTATCATTGGTAGTTTCTGTATGAACGGTATTGGGTTTATGCTGCATAGGAATATACAAGTTAGAGGAAACAGACACCCATCTGCTTCTACACCTGATCCAACGATCCTGTGCTTAACTGGGGTCACTGTAAATATACTGtcacttatttgtattattatcattatgaattatttctcggcagacgcccttatccaggtgaAAAGTATAGAGagtctgtttgtgtttggtCTATGGTCACTAGATCTTCAGAGTCCTCCAATCTGTGCCTCCTCTCGTTTCTCCAGCGGCTTCAATTTAAAACACGTATGGGAGCCACGGTCTGCAAGCCATCAAGTCATCGGGTCTAAACCCCCGAGATGGGACTTGAGATGGGGGGGTAGCGTGGTGCTGCACCAAAGGGTGTCTGGGGGGtagtggggggggtgggggttccAACCCTTATGTGTGTGGAGGATCCCCTAGCAGGCATCTCTCCACACGAGTTCAGTTTGTTCACCAGTCGACAGACAGCGGGTTCAGATTAGCAACGATTAATACTGCTCTGGACAGTGGGCCAGTCTTCCAACACTTcatatcaaaatgaaaataaaagcaaagttCGATTTTGAGGTAGGTGCAatcaaaaattacatttctgcatcttcatcgtcatcatcattattattattatattattagtttaaGATCCGTATTGCTTTAAGCTAGACCAAGACCTTCCTCCCATTTCTGCTACTCGAATCATAGCCTAGAGTTTGTACGATCAATGTCAGTGATGTGACAGGAAATGTTCTATTTTCATTGCACCGTCCTCTTCAAaagtttagagagagagagagagaggcaacaGACCAATACTTGGCTAACAATACAGCAATTTCCCATTTAACATAGAGAACAATTTAAAGACTTGAGTGATCAATCCATGCAATACCTATGAGCTGAATGCATAGACATTTTTGTCGCTTGTGAATTCACCTTTGTTCCTTCTTTCCCAAACACAAGTGTCAGTCCGACCTACACTAAACCACACTACAACATCGTAGCAGCAGAGTGCAATTACACGCACGTGATTTTTCTAATTATCCTTAATTTTTTTGGTAACTTGGTATCTCTCAGGTCCCCCCGGTTTCTCAGACCAAATAACCCCCCCCATGATTTCATGTGCTGACAAACTGAGCTGCTCTTGCTTTGGCACTTGTCGGTCTGAAGCCTATTTCACATATAAAAAGTATAGCTGTGAAACAGTGCAACTATAAAAAGGCGGTGCAGGGAGTAACGTGGACACTCACATGACACATTCAATAAAACTACGTCAGAAGAGGGAACGCGACACctaagaggaaaacaaaaataagccGGACCGGACAGCACGTTCTGTTTCATCACAGGGTTAAGCAGAATAAAAACTCTTTCCTGTGAGCCCTGAACCGGCCTAAACCAGGTCCGGTCATCACCGACTTACCGTTGAGGTCTCCTAATTGAACAACCTCGGCTACACAGATGTGTTACGGTCGTCCGAAGCTGGAAACCAGAAATCTGCAACCTGTGCCCTCAGATGCTGTAAGGGCTTTATATCAGGGAATTTTCTTGTCGTGCTTGGATTTGTCCTTTTGTGGCTGTTGATGTATGCCTAGCCTGGTGAAGCCTACTACTCTACAAGACTGTCCCCTTCTTTCCCACACATGTGTCGGCCTGTGGCTCTGCATATCAAAAGAGGGGTCGGCTTGTTGAGTCTCGGACTGGGAAGGTCAAACTCTTCACGAAAAAAGtgcatttggttttaatttcgAAATATATTTGTTGGCGAGTTATGTTGACATAATTGATATTCGCTGCTATATCTCAGCAATTTAAATTAAGAGAAGGGTTTTGTGCTCGGTCCAAGGTAGAGGTGGCTTCTAGTGTCCCTTAACAAGTCAAAACAGGACAATGTAATACTTAGGCTGGGTAAATTGATCGAACACTAAACCTAGCggacacattttctaaataattttCCCTGTCTAGCAGTTAGCCATTTTCTGGGATCTCTGGGACAACAGCTCTTTCTTTGACAACCATTTTGTGGGAACGTATCGGTTAGCTACGCTGGGGATTAACGGATCAGTTCAGGTGTCCGGGAGTCAAACCCCTGAATTTGAAGGGTCCTTTGTTTCTTGGGTTTTTGTCCTTGTCAGTCTACCTGCCTTTAAAGATGGAGATCAGTCATCACCCAGTATGTATTTCTCCAGATTTAGCAACATCTATTTATATAGCAACACAAACGAACGGTGGTTTGTAAGTGGTTTTCTTTGAATGTCACTATAAATACTTGAAGACAACACATCACATTTAGCTGTGCGGCATTAATTCAGTGGACAAAGTCTACTTAGCCATGCATTTGTTACCGGTTTTGAGAACAGAGCTGCACAATACCTTACACGCAACATACATAATCATATAGAAAGCATGCAATTCATAacactgttattttattagGTCAGTCccactgaaaatgaaacctCATTAGTGGATAAAACTAGTGGTAAGTTTCTAATTGAAACCCATTGTCCCATTGGCTCCAAGTATATCCAATGCGAATCAAGCTTACTCAAGGGTTGAGTGACCATGATTGCTGATTACACTAAGAACCCATCCTTGTGGGTGCTGAATATCATGGGGCACGGCGGCATGGATGGCCTGGGTCCTTTCCAGGAGTGAAGACACTTGTCCCCTCTACAACAACCTTGCATCAGCTAAGCTTGATCTCATCCGTGCTGGAGGTATTAAGAGCCTATGTGTTTCCCCAAACGTCTCCTTTACCTCCCACTAGTCTCCAGGAAGGTCCTCCTAGTGGCATTACCCTTGCctcaacccccacccccttccctcccttccCTCCCCTGAAGACATGGAAGTGAATTGGTGAATCTATCAAGTTGCTGGGCTCAGACGCATGTGGTGCAGTCCTGCATGATGGGGGTGGTCTGCTgttcgtgtttgtgtgtgcagtgttcCAAGGAGCTGGAGCTCTTCAGGGGCATCAGGCAGCGCTCGACAGAGCGGGTGCTCTGCAGGATGCCCCAGCAGCACAGCACCCGGAGGAACTCCTTGCGCATGTCCTTGCTGCGCAGGGTGTAGATGATGGGGTTGAGCATCGAGTTGAGGGTGGCGAACCCGAAGAAGATGGTGGACTTGGAAAGGATGGGGCAGGACTGCACAGAGTGGCAGGAGACGTCCAGGAGGAGGATGGTGAACGCGGGCAGCCAGCACACGATGAACACCCCCAGCACGATGGTGACAGTCTTGAGCAGTGCATAGGCTGGGGAGGCGGTGGCCTCCTGGTGGCTGGACTTGACGATCAGGTAGATGCGCACATAGAGGATGAGGATGGAGAGCAGGATGATGCTGAAGATGGTGACCACAAAGAGGATGTACTTTTTGGAGTACAGGGGCAATACGGCCGAGCAGTCGTTCAGGTTGTTGATGCAGTTCCAGCCGATGATGGGCAGCCCACCCAGCAGGATGGAGGTGACCCAGCAGGTGCCGATCAGGAGGAACATGCGGCACGTCTTGTTGCTGCCGTACACCTTCACCTTGGTGATGGCGATGTATCGCTCGATGGCGATGGCCAGCAGGCTGAAGACAGAGGCCGCCAGCGCGATGAACGCCGTGCCCTCGCGGATGAACCACTGCACCGGCACCAGGTCGAAAGTCCGCCGGCCAGAGAGGAAGATGTTGGCAATGTAGGCGGACCCAGCCAAGAGGTCTGAGAAAGCCAGGTTGCCGATGAAGAAGAACATGGCTGAGTGGAACTTCTTGTTGCGGAAGACGGCGATGAGGACCAGCAGGTTCTCCAGAATGATGATGCAGCAGATGACAATGAAAACGATGGAGAGGGAGTCCAGGCTGTCCTTCATGCGGTCATTGTCCATCAACCTTTCCTTGGACAGGTTCTTGGCACGCATGTAATGTGTCATGATGACCGAGTTGTTGTAGTACTGCTCGTACTTGCTCCTCATGGTGAAAGTGTAGCAGTAGACCACGTTCTGGCAGAAAGTCATTCTTGTCCTGGGGGTGATCGGGACGTGAAGGCCGCACCCATCACAGTGACGCAACTCGGGGACCCGGCAAGCCAGGCAGGGTC

Function

symbol description
s1pr2 Predicted to enable sphingosine-1-phosphate receptor activity. Acts upstream of or within several processes, including embryonic morphogenesis; sensory organ development; and sphingosine-1-phosphate receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including cardiovascular system; midbrain hindbrain boundary neural rod; midbrain hindbrain boundary neural tube; nervous system; and pleuroperitoneal region. Used to study carcinoma. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 68. Orthologous to human S1PR2 (sphingosine-1-phosphate receptor 2).

NR:

description
PREDICTED: sphingosine 1-phosphate receptor 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61614 True 5126 TUCP 0.48 2 1930654 1936502

Neighbor

gene id symbol gene type direction distance location
AMCG00008468 eif3g coding upstream 36427 1891096 ~ 1894227 (+)
AMCG00008460 NA coding upstream 40887 1884367 ~ 1889767 (+)
AMCG00008458 NA coding upstream 49692 1874037 ~ 1880962 (+)
AMCG00008461 NA coding upstream 128896 1796344 ~ 1801758 (+)
AMCG00008459 NA coding upstream 134852 1794811 ~ 1795802 (+)
AMCG00008472 NA coding downstream 94286 2030788 ~ 2046937 (+)
AMCG00008478 NA coding downstream 319955 2256457 ~ 2257456 (+)
AMCG00008479 pde4a,LOC107703358,LOC107725012,LOC107587971,LOC107674699,LOC107596808,LOC108243727 coding downstream 340289 2276791 ~ 2277090 (+)
AMCG00008484 NA coding downstream 458562 2395064 ~ 2402598 (+)
AMCG00008485 NA coding downstream 483838 2420340 ~ 2422009 (+)
G49294 NA non-coding upstream 20235 1908823 ~ 1910419 (+)
G49261 NA non-coding upstream 74398 1799861 ~ 1856256 (+)
G49270 NA non-coding upstream 81916 1815584 ~ 1848738 (+)
G49271 NA non-coding upstream 91650 1838186 ~ 1839004 (+)
G49264 NA non-coding upstream 124627 1803825 ~ 1806027 (+)
G49321 NA non-coding downstream 226817 2163319 ~ 2208477 (+)
G49341 NA non-coding downstream 275927 2212429 ~ 2213493 (+)
G49431 NA non-coding downstream 508683 2445185 ~ 2464667 (+)
G49541 NA non-coding downstream 875672 2812174 ~ 2812893 (+)
G49582 NA non-coding downstream 949329 2885831 ~ 2886138 (+)
AMCG00008451 ubl5 other upstream 302321 1625294 ~ 1628333 (+)
G49208 NA other upstream 606385 1322811 ~ 1324269 (+)
AMCG00008423 NA other upstream 962071 965838 ~ 968583 (+)
G49013 NA other upstream 1051141 876554 ~ 879513 (+)
G48846 NA other upstream 1342208 587280 ~ 588446 (+)
AMCG00008473 NA other downstream 126054 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 151978 2088480 ~ 2107792 (+)
AMCG00008476 NA other downstream 191213 2127715 ~ 2143394 (+)
G49340 cdc37 other downstream 272981 2209483 ~ 2211514 (+)
G49523 NA other downstream 829377 2765879 ~ 2770044 (+)

Expression


Co-expression Network