AMCG00008485


Basic Information

Item Value
gene id AMCG00008485
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2420340 ~ 2422009 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008485
ATGCCGGAGATCAACTACCTGCTCTCTGTGTCCTGGAGCTACATCAAGGAGTTCGGGGTTGTAATTCGATTCAACCAACAAATTGCTTTCAGCTCTGCCCGAGATCCTTTCATCTGCGCTCTTTGTAGTGTCATTATCGCTCGGGCTGTGTGCGTATCTGAAAGTTTCAGGAGGCGTTCGGGGCCTGTCTCCCGCTCGTCTGACCGGGTGTGGCGTTCCCATGCCGGTGCTGTGTTACGTGGCGTGAAGGCCGGGGGCGTGGGAGCGACCCGGCGCTGTCACTCTGAAGCCCCTTTCAAGAGGATGCTGAACCGTGAGCTGACCCACCTGTCAGAGATGAGCAGGTCGGGCAACCAGGTGTCCGAGTACATCTCCAGCACGTTCCTAGGTGAGTTACCGACTGGCTCTCCCCGGGCCCCCTGTGTCCCCTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008485 True 432 mRNA 0.58 4 2420340 2422009

Neighbor

gene id symbol gene type direction distance location
AMCG00008484 NA coding upstream 17742 2395064 ~ 2402598 (+)
AMCG00008479 pde4a,LOC107703358,LOC107725012,LOC107587971,LOC107674699,LOC107596808,LOC108243727 coding upstream 143250 2276791 ~ 2277090 (+)
AMCG00008478 NA coding upstream 162884 2256457 ~ 2257456 (+)
AMCG00008472 NA coding upstream 373403 2030788 ~ 2046937 (+)
AMCG00008468 eif3g coding upstream 526113 1891096 ~ 1894227 (+)
AMCG00008483 NA coding downstream 2386 2424395 ~ 2430781 (+)
AMCG00008487 NA coding downstream 93220 2515229 ~ 2516509 (+)
AMCG00008489 elavl3,LOC102780136 coding downstream 194454 2616463 ~ 2630199 (+)
AMCG00008493 NA coding downstream 293811 2715820 ~ 2720661 (+)
AMCG00008499 NA coding downstream 365859 2787868 ~ 2793880 (+)
G49341 NA non-coding upstream 206847 2212429 ~ 2213493 (+)
G49321 NA non-coding upstream 211863 2163319 ~ 2208477 (+)
G49294 NA non-coding upstream 509921 1908823 ~ 1910419 (+)
G49270 NA non-coding upstream 571602 1815584 ~ 1848738 (+)
G49431 NA non-coding downstream 23176 2445185 ~ 2464667 (+)
G49541 NA non-coding downstream 390165 2812174 ~ 2812893 (+)
G49582 NA non-coding downstream 463822 2885831 ~ 2886138 (+)
G49598 NA non-coding downstream 487653 2909662 ~ 2910628 (+)
G49599 NA non-coding downstream 488685 2910694 ~ 2910939 (+)
G49340 cdc37 other upstream 208826 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 276946 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 312548 2088480 ~ 2107792 (+)
AMCG00008473 NA other upstream 344691 2062556 ~ 2075649 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other upstream 483838 1930654 ~ 1936502 (+)
G49523 NA other downstream 343870 2765879 ~ 2770044 (+)
G49583 smarca4,LOC102779508 other downstream 464757 2886766 ~ 2888896 (+)
AMCG00008526 NA other downstream 1007888 3429897 ~ 3885604 (+)
G49980 NA other downstream 1734079 4156088 ~ 4160062 (+)
G49982 NA other downstream 1740049 4162058 ~ 4165483 (+)

Expression


Co-expression Network