AMCG00008458


Basic Information

Item Value
gene id AMCG00008458
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1874037 ~ 1880962 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008458
CTCCCGTGACGCGCAGCGCATTTCCTGTGACGCACCGGAAGCGCATGGCGCGGCTGCAGCGTGTGAGCGGAGGGAGACGGAGCGCTATGGCGAGACACAGTTCCTGTACATTCAaagatttcttatttatttaacatcacTATCGTTTCgcttattttgtattaagacAACAACAACCTTTAGCCATGGGGAAAAGTAAGACAAAGAACCAGAAGAAGTCTCGGCAGAACGCCCTCCATGTGGCCCAGGAGGAGTACAGCTCGGTCCCGCACTCGTTCGTCTTCCACCGGGGCCACATCGGCAAGAACGTGGAGCAGCTGGTGCGCAAGAAGAACGTACTGAAAGACTTCGTTGCCGTGGCGGGACCGCTTGGGGTGACGCACTTCCTAATCTTCGGCAAGTCGCCCTCCAGCATCGGCCTGAGACTTGCCCGTCTGCCCAAAGGCCCGATGCTCCACTTCCGCGTTCTGAAGTACGCCCTGATCAAGGATGTGGTGTCGTCCGTGAAGCGCCACCGGATGCACGAGGAGCAGTTCACGCACCACCCCCTCCTGATCCTCAACAACTTCGGGGTGGAGGGCATGCACGTGAATCTCAACAGCATCAAGAGGTGCGTCTTGATCAACTACGACCCCAAGACCCAGTCCATTGAGTTCCGACACTACAGTGTGAAGGTGGTTCCTGTGGGCATGAGCCGGGGGGTGAAGAAGCTCATGCAGGAGAAGCTTCCCAACATGGGCCGATTCGAGGACATCAGCGAGCTGCTCATGAAGGGGGCCAACCTGTCGGAGAGCGAGGCGGAGCAGGACGGGGATCACAACATCACGGAGCTGCCGCAGGTGTACGCCGGCCGCGGTAACATGAAGGCCCAGCAGAGCGCCGTGCGGCTCACCGAGATCGGCCCCAGGATGACCCTGCAGCTGATTAAAATTGAGGAAGGCATGGGCGAAGGCAATGTGATGTACCACGCTGTCGGTAAGTGGCAGCGGAGTCTGGAGGGAATCcggaggaggaaggaggagcAGGGCAAGGGCGACGACAGCGAGGTGGAGGATCCCGGCACGCAGGAGGACAAGCCGGCGCTGGACGAGGAGTCTGACGAAGAGGCCAACTACTACAGGGAGGCCGTGGGGGAGGAGCCGGACGAAGACATGTTCCCAGACGCCTCCAAGCGGAAGCGGAGGAGGGCTGAAGGGAAGCCCCACAATCCCTTCAAGAAAAGGAAGTTCTCCGCGGAGAGAGGGGACAAGGCGGGCCGAGACCCCGCCCGGGAGGGACCATCCAAGAGGGGCCCGAAATACGGCAAGGGCTCCCCGGGGCAAGGCAGGGGCAAGGCCGAGCGGGGACGGGCGGGCGACGGGGCACCGGGGAAGCGGCACCAAAGGCAGGGGGAGAGGAAGTTtggagaggagaagaggaacAAGTTTGGGGGGAAGAAGTTCGGGGGGAAGACGACCCCGGGGGCGGCGAAGGGACTGAAGTTCAAGGGGCAGAAGGGGAAGCCTCGACCGGGGTTGAAGGGAAAGGGGCAGAGCAAGGCGAGGCCTGGGGGGAAACCAGGATTCAAGCAGAGAAAGGGTAAAGGCAGGCCGTAGGCCTCGGGTGAGGAAGTCTGTCTAGTGTGGAGGACCTCTCGACGCTGGTACTGCATTGGCAGGATGTAACAGATTCTTATCGAGGCCGTCTCTTGCACAAATAGTGACGAGCCGGAGCTGCCGGCTGAGTCTTAGCGGTGCAGTCGGCTGCCATGGTCCTGGAAGCAGCTTGTGTGGGTTTGGGGGTTTTGGTGAGGAGGCGGTATCTCGGTCCAGGTGCGGGTGAAGCATGTGACGGGGAAGTGACTGACGAAGGTTAGTCTGAGCTTGATGTTCATGATACGAAAGAACCCGTTTTGCAAAGCATAGTTCAGGGAGACCTACAGAGATGTCTGGAATTAGCCCCCCTCCATACTGCTCAGTCACCGGTGTAAAACCCACTCTGCCGATATAAGAGGTGTACATTGTTTTTTCCTAGAAGACCACGTGCTTGGAGTGTCCTTTTTCTAAGCGTCTAAAGTTCAGTTTCAGTTCGTCTGCCGTTTCCTTAAACTGCTTGTTTTTATTGCGCAGGGTCAGCTGTGCTCTTTGGCCCGACTGGGTCTAATTCAAAGCCTGTCTGGTTCTTGTTCAGTTGCCAGGAACAGTGCTGTGGTTTCATGTTCGATATCTGTTTCCTGCACGGTGCTCTCAGTAAACCCAGAAAGCTGATTGTTCCTCTCCTGTCACTTCTGTATTCCtccagtgtttttgtgtatacATGCTGTACAGATGCAGATAAAGTTAATGTTAAAGTtttgtacaataaaatgttgaacCAAAAAAA

Function

GO: NA

KEGG:

id description
K14859 SSF1_2; ribosome biogenesis protein SSF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008458 True 2361 mRNA 0.57 11 1874037 1880962

Neighbor

gene id symbol gene type direction distance location
AMCG00008461 NA coding upstream 72279 1796344 ~ 1801758 (+)
AMCG00008459 NA coding upstream 78235 1794811 ~ 1795802 (+)
AMCG00008454 NA coding upstream 136522 1718172 ~ 1737515 (+)
AMCG00008455 NA coding upstream 157170 1711117 ~ 1716867 (+)
AMCG00008450 olfm2,LOC104918560,LOC100706999 coding upstream 367463 1497221 ~ 1506574 (+)
AMCG00008460 NA coding downstream 3405 1884367 ~ 1889767 (+)
AMCG00008468 eif3g coding downstream 10134 1891096 ~ 1894227 (+)
AMCG00008472 NA coding downstream 149826 2030788 ~ 2046937 (+)
AMCG00008478 NA coding downstream 375495 2256457 ~ 2257456 (+)
AMCG00008479 pde4a,LOC107703358,LOC107725012,LOC107587971,LOC107674699,LOC107596808,LOC108243727 coding downstream 395829 2276791 ~ 2277090 (+)
G49261 NA non-coding upstream 17781 1799861 ~ 1856256 (+)
G49270 NA non-coding upstream 25299 1815584 ~ 1848738 (+)
G49271 NA non-coding upstream 35033 1838186 ~ 1839004 (+)
G49264 NA non-coding upstream 68010 1803825 ~ 1806027 (+)
G49236 NA non-coding upstream 132460 1642430 ~ 1741577 (+)
G49294 NA non-coding downstream 27861 1908823 ~ 1910419 (+)
G49321 NA non-coding downstream 282357 2163319 ~ 2208477 (+)
G49341 NA non-coding downstream 331467 2212429 ~ 2213493 (+)
G49431 NA non-coding downstream 564223 2445185 ~ 2464667 (+)
G49541 NA non-coding downstream 931212 2812174 ~ 2812893 (+)
AMCG00008451 ubl5 other upstream 245704 1625294 ~ 1628333 (+)
G49208 NA other upstream 549768 1322811 ~ 1324269 (+)
AMCG00008423 NA other upstream 905454 965838 ~ 968583 (+)
G49013 NA other upstream 994524 876554 ~ 879513 (+)
G48846 NA other upstream 1285591 587280 ~ 588446 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 49692 1930654 ~ 1936502 (+)
AMCG00008473 NA other downstream 181594 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 207518 2088480 ~ 2107792 (+)
AMCG00008476 NA other downstream 246753 2127715 ~ 2143394 (+)
G49340 cdc37 other downstream 328521 2209483 ~ 2211514 (+)

Expression


Co-expression Network