G49236


Basic Information

Item Value
gene id G49236
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 1642430 ~ 1741577 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61531
gaaaaaaaaaaacatatatNNNtatatatatatatatagatttatctAGAGTTTGTAAACACTTTCATTCTGCAATAACCACCAACAATGAAACCGGGCCATAACCCAAGTGTCTAAACCAACCAAGGCAAAATTCCTGTGGAGAAAAATTCCCTTTAGGAGAGCGAGAGGGGGAGCCCAAACACAGTGGGGAAAATTATcacaacaacaattataataagagattataatgattataattgtAAGAATGAATCTGAATCCCGAACCCGAGATTGTGCATTGAGGTGGCATTCGAACGCCAGCCTGGTTTCTCTTCCGACCCAACTCAACACGCGTCAGTCTGTGTTGCTCAATCTCTGTCCGTAAATTCGCTGCCACCGTAAACGTAGGCTTAACAGAGAGCGTCGTCGAATATCAGTCAACTGAATAGAACTCTTCAAACCATCCttttacacataaaaacatggTCTGCCAGCccctccaaaaagaaaaaactattacCCTGATAAATTGCACACCAAATCCTGATGCTTTCCTTTATATCTCCGCTCTTTGATAAACCTATTTTGCAAAACGaactggagagaaaaaacacataaaaaccatgatcataaaacaaaataaaaaatgaaaagtcgagatttaaatgttgcttttttgcACTCCAAAACTTTTGAGttcaatactaaaataaaaacaaaaaacgctaAAGAACAGCTATGGCAAAATTTGGAGTTCCCGTCTTCTCGTTTTCAAAtacttccttttttttaaagtttttttcatgcatttttagtGGCAATTTGGCTTCCCCTTGGCCAGCTTCACACAGTGTCCCACCCATGACCCCCTCGCACACGGTCCCTGCATTCCTTGGCTTTGGAGTGAATGCAGTGGTCTGTTCGTAGCTCTAACAACCTGCTCCCCTCTCGCCCCTTTACCCCAGTCCTCTGAATTTCAGAGAAACGGTACAGCAGCAGAAACCTTaatccttttcttctttttcttctcagcCATCTTCAGTGtttatcaaaaaaataaaatatatatattaaaaacagggGGTTGGCTTCTCAGATCGTCGCCTTGATGAGCACTGATGTCCTGACTGTCGGTGGGAGGGCTGCAGGTCAATTCCTGTGGATTTTGACGTAGGAAGTAGGGATGTAGCCCTCGTCGCCATTGGCTCGGCGCACTCTCGTCCAGCCGTCTCCCTTGTCCTCCTCCACCATATTGAAGATCTCTCCTTCCGCCATTGAGATGGTGCCTTCACT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU61531 True 1274 lncRNA 0.41 2 1642430 1741577

Neighbor

gene id symbol gene type direction distance location
AMCG00008450 olfm2,LOC104918560,LOC100706999 coding upstream 135856 1497221 ~ 1506574 (+)
AMCG00008448 NA coding upstream 156027 1485010 ~ 1486403 (+)
AMCG00008449 NA coding upstream 168447 1472688 ~ 1473983 (+)
AMCG00008447 NA coding upstream 197972 1444177 ~ 1444458 (+)
AMCG00008444 col5a3,LOC106593482 coding upstream 319683 1315607 ~ 1322747 (+)
AMCG00008459 NA coding downstream 53234 1794811 ~ 1795802 (+)
AMCG00008461 NA coding downstream 54767 1796344 ~ 1801758 (+)
AMCG00008458 NA coding downstream 132460 1874037 ~ 1880962 (+)
AMCG00008460 NA coding downstream 142790 1884367 ~ 1889767 (+)
AMCG00008468 eif3g coding downstream 149519 1891096 ~ 1894227 (+)
G49233 NA non-coding upstream 10887 1629940 ~ 1631543 (+)
G49221 NA non-coding upstream 135495 1506713 ~ 1506935 (+)
G49178 NA non-coding upstream 479740 1162483 ~ 1162690 (+)
G49097 NA non-coding upstream 524650 1080021 ~ 1117780 (+)
G49261 NA non-coding downstream 58284 1799861 ~ 1856256 (+)
G49264 NA non-coding downstream 62248 1803825 ~ 1806027 (+)
G49270 NA non-coding downstream 74007 1815584 ~ 1848738 (+)
G49271 NA non-coding downstream 96609 1838186 ~ 1839004 (+)
G49294 NA non-coding downstream 167246 1908823 ~ 1910419 (+)
AMCG00008451 ubl5 other upstream 14097 1625294 ~ 1628333 (+)
G49208 NA other upstream 318161 1322811 ~ 1324269 (+)
AMCG00008423 NA other upstream 673847 965838 ~ 968583 (+)
G49013 NA other upstream 762917 876554 ~ 879513 (+)
G48846 NA other upstream 1053984 587280 ~ 588446 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 189077 1930654 ~ 1936502 (+)
AMCG00008473 NA other downstream 320979 2062556 ~ 2075649 (+)
AMCG00008475 NA other downstream 346903 2088480 ~ 2107792 (+)
AMCG00008476 NA other downstream 386138 2127715 ~ 2143394 (+)
G49340 cdc37 other downstream 467906 2209483 ~ 2211514 (+)

Expression


Co-expression Network