G48961


Basic Information

Item Value
gene id G48961
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 748598 ~ 750602 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61185
CCCGAAAGCACTAACCCCCTCTGTATGATGTAGGCgacagaaatgtgtgtatgtgtgtgtgagtgagagagtgtgtggagGTGAGGGGTGCATGTCCGGGGCTTTGcggtatagatagatatttatgtagtgagagagggagggagatggtgTCCAGAGCAGACGGTACAGGATTGCTACGTGATTGGGGCTGACAggcaggggtcaggggtcagggtcACCGAACCAGACAGCTGCTGCTCCGAGGGCCTgtgtctccttctctctctctctctcctgcctggttgttctgaaagtgtttttaaactCTCCTCCAAAGAGCTCCGCCCCCCCCATGGGTCCAATGCTCGTAACTGTGGAACGAGAGACACtagcgcccccccccccagcgtGTCTCTGTCCCCGGGGTGCGGTTTTAACTTTTTGTACAGTTCTGTGAAGTGGGTTTTAAATGTGAACGACAGTAGGGAGGAAACGCACACGGGCCTGCagtgtttgtgggggggggctgtAGCTGTGGACGGAGGCGGGTCAGTGTGTTACGGGAGCGGGGGGGTGCTGAGCGAGGGATGGAGCAGGGAGAGCTAACATACGGCACAAATACTGAGcacacccaaacacacagctgcaggAGACCCTTACAGTCAATAAGGCCAGAGAGtgcgagtgtgtgtgtgtgtgcgtgtctgtgtgtccgtctCTGCTGGGGGGGACTGTGGCCTCTGTTGGGAACCTCTCCCACCTGTGAGAAGCAATACCCGGAGGGGACGACCTCTCTGGCCACGTCTGTCGGTTCCTTCAGGACTGTGTGTTACAGTCTCTCAAACTAATCACCCAATCAGACTtacacgcatgcacgcacacacacactaaggTCCCCTCGCTCCCTCAGCGCGGCCGCTCCGGCGCTCTCCAAAGTGCTGCCTTCAACCAGAGACCTGgcggggggccggggggctcGGCAGGCCTGCTATATAACTACATGTACTTATAAAATGGCGGAGactattatgatgattataaagactattataattgtaattgttattaacTTCTATTAACTGCTAGCTAAACGTGATCTTAATTTCTCTGTTAAACTTGtaattttaaaccttttttttatgccttttttttttcctgcgtTCATGTCTTCTTGAGTAAAGGGATGTAGAGACACTCTGGACACATCGCTCTCCTTCATTTTTGGTTGTTACTCTTCAATATGATTGCTGATGATGTTTCACTGTTTGactggggtgtgggggggggtatgGTTCTGGGACACAGACAATGTTATTGGATTATAGTCTTTAAaagattttatttcagctcctcttcatatatttatatagtataaCTCAACGACAaagacagtccagtccagcaggctCTCGGCCCTGGTCCCAAATTATGAACTGAACTAGTTAGTGGTTTAATGAGTCCAGACTGAATTGTGGTATTTAGCCCCTGAGTGAAGTTGCCTCTAACTGTAGCTTGTCAGGACTGGAGTCTCCCGTGTTCAAgtgtcagtcacacacacacacacacacacacacacacacacacacgcatgaaTACACAACCACATACAGTTGTGTGTATGCATACTGACACTCTTAGACACCCCCAGACCAaaacacagacgcacacgcacgcacactcTCAGTACAGAGGTCTGCTGGGGTTTGAATGAGACGCTCGGGACTGCCTGCCTAGTTTAGGGTGGGGGGCTGAATGAGATGAGCCGGTGCTACGAGAGCGCGAGGCGGGGGGGGCTGGCAGTAAAGCACTACTGTACATAGGCTTTGTGGTTTAGCTTCTGATCGATAAATTAATGTGATTAATTTCCAGCTTGGTATTGATCCATCAAGTCTTCCTTctgatttttatattgtttcttcaAATGCTCTTTATTAACCATTTATTGCCAGCCTTTTGTTTCCTCTGTTTGATgtcatcatattatttttattattaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61185 True 1979 lncRNA 0.49 2 748598 750602

Neighbor

gene id symbol gene type direction distance location
AMCG00008412 NA coding upstream 28724 716095 ~ 719874 (+)
AMCG00008410 NA coding upstream 35979 709248 ~ 712619 (+)
AMCG00008403 rfx1,rfx1a,LOC108239327,LOC105013142 coding upstream 119161 609033 ~ 629437 (+)
AMCG00008402 NA coding upstream 207554 540113 ~ 541044 (+)
AMCG00008395 NA coding upstream 238741 506943 ~ 509857 (+)
AMCG00008411 NA coding downstream 24789 775391 ~ 778431 (+)
AMCG00008418 atp13a1 coding downstream 34824 785426 ~ 799063 (+)
AMCG00008417 NA coding downstream 56157 806759 ~ 813360 (+)
AMCG00008419 pbx4,LOC103392870 coding downstream 72076 822678 ~ 843135 (+)
AMCG00008429 NA coding downstream 197055 947657 ~ 950842 (+)
G48947 NA non-coding upstream 52485 694468 ~ 696113 (+)
G48921 NA non-coding upstream 57561 640876 ~ 691037 (+)
G48915 NA non-coding upstream 116205 629884 ~ 632393 (+)
G48830 NA non-coding upstream 194338 552467 ~ 554260 (+)
G48818 NA non-coding upstream 258732 488625 ~ 489866 (+)
G48996 NA non-coding downstream 15269 765871 ~ 783981 (+)
G49066 NA non-coding downstream 179104 929706 ~ 930827 (+)
G49069 NA non-coding downstream 182543 933145 ~ 936281 (+)
G49101 NA non-coding downstream 307959 1058561 ~ 1107290 (+)
G49102 NA non-coding downstream 312947 1063549 ~ 1068033 (+)
G48846 NA other upstream 160152 587280 ~ 588446 (+)
G48811 NA other upstream 196692 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other upstream 223273 517499 ~ 525325 (+)
AMCG00008376 NA other upstream 485576 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 544203 153189 ~ 204395 (+)
G49013 NA other downstream 125952 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 215236 965838 ~ 968583 (+)
G49208 NA other downstream 572209 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 874692 1625294 ~ 1628333 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 1180052 1930654 ~ 1936502 (+)

Expression


Co-expression Network